Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AC011979.2-201ENST00000527568 352 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.8□□□□□ -1.8
NPAS1Q99742 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.8□□□□□ -1.8
NPAS1Q99742 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.8□□□□□ -1.8
NPAS1Q99742 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.8□□□□□ -1.8
NPAS1Q99742 AC025884.1-201ENST00000556034 378 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.8□□□□□ -1.8
NPAS1Q99742 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.8□□□□□ -1.8
NPAS1Q99742 AC022655.2-201ENST00000577280 318 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 FAM60BP-201ENST00000578364 658 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 AC010928.3-201ENST00000587712 541 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 AP000860.1-201ENST00000605250 559 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 AC007684.1-201ENST00000609671 477 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 AL136313.1-201ENST00000624804 202 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 MIR6863-201ENST00000636112 90 ntBASIC3.8□□□□□ -1.8
NPAS1Q99742 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.8□□□□□ -1.8
NPAS1Q99742 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NPAS1Q99742 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
NPAS1Q99742 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NPAS1Q99742 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NPAS1Q99742 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AC106871.1-201ENST00000568324 3102 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 XIAPP3-201ENST00000312918 795 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 RNU1-89P-201ENST00000384592 164 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
NPAS1Q99742 RNU6-882P-201ENST00000391025 103 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 RNU6-754P-201ENST00000391166 107 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 Z98941.1-201ENST00000407764 100 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 RPS23P10-201ENST00000416185 486 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.79□□□□□ -1.8
NPAS1Q99742 RPL23AP38-201ENST00000423801 469 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 DPPA2P1-201ENST00000428060 556 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC133104.1-201ENST00000429100 218 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.79□□□□□ -1.8
NPAS1Q99742 C1DP4-201ENST00000455429 424 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC023194.1-201ENST00000493084 308 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NPAS1Q99742 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AC099522.1-202ENST00000514718 367 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 SNORA31.9-201ENST00000516429 84 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 RNU6-1073P-201ENST00000517182 106 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 RNU6-840P-201ENST00000517275 65 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 MRPL49P2-201ENST00000521066 465 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NPAS1Q99742 AC109635.4-202ENST00000531666 412 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.79□□□□□ -1.8
NPAS1Q99742 CCNG2P1-201ENST00000549521 1000 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC136619.2-201ENST00000563361 631 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.79□□□□□ -1.8
NPAS1Q99742 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AF038458.1-201ENST00000588406 262 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AC093838.1-201ENST00000613014 469 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.79□□□□□ -1.8
NPAS1Q99742 uc_338.12-201ENST00000616344 181 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.79□□□□□ -1.8
NPAS1Q99742 AL603758.1-201ENST00000618654 241 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC015967.1-201ENST00000619893 476 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC095031.1-201ENST00000623685 672 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.79□□□□□ -1.8
NPAS1Q99742 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NPAS1Q99742 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NPAS1Q99742 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.79□□□□□ -1.8
NPAS1Q99742 MARK2P15-201ENST00000432204 2186 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.79□□□□□ -1.8
NPAS1Q99742 AC005832.2-201ENST00000538921 1430 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
NPAS1Q99742 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.78□□□□□ -1.8
NPAS1Q99742 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.78□□□□□ -1.8
NPAS1Q99742 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
NPAS1Q99742 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NPAS1Q99742 MIR423-201ENST00000362201 94 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
NPAS1Q99742 RNU6-456P-201ENST00000384493 107 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 AL109755.1-201ENST00000401791 649 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NPAS1Q99742 RNA5SP107-201ENST00000411358 122 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.78□□□□□ -1.8
NPAS1Q99742 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.78□□□□□ -1.8
NPAS1Q99742 AC073464.1-201ENST00000429823 534 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.78□□□□□ -1.8
NPAS1Q99742 AC091390.1-201ENST00000433904 331 ntBASIC3.78□□□□□ -1.8
NPAS1Q99742 AL132765.1-201ENST00000434165 553 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms