Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC106871.1-201ENST00000568324 3102 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 GNG5P1-201ENST00000255500 204 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 HMGN1P24-201ENST00000412282 298 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 RPS17P8-201ENST00000434525 335 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 RPL7P54-201ENST00000438336 674 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 DEFB109F-201ENST00000491870 277 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC078918.1-201ENST00000498515 228 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC026427.2-201ENST00000506228 536 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 Y_RNA.672-201ENST00000516289 104 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 RNU6-709P-201ENST00000517257 104 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 RN7SKP92-201ENST00000517266 244 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC020661.2-201ENST00000560114 134 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC008745.1-201ENST00000604064 271 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AL133255.1-201ENST00000606374 441 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 BX664608.1-201ENST00000610519 487 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 MIR6130-201ENST00000619419 109 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AC005858.4-201ENST00000623191 700 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 AL442639.1-201ENST00000625030 1899 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.55□□□□□ -1.68
CLIP3Q96DZ5 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC108467.2-201ENST00000617640 1597 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 Y_RNA.67-201ENST00000362870 100 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 RNU6-1322P-201ENST00000364309 107 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 RNU1-39P-201ENST00000383897 165 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 RNU6-1074P-201ENST00000383995 104 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 VN1R36P-201ENST00000414936 291 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC018644.1-201ENST00000429934 551 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AL359265.2-201ENST00000434367 631 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AL451139.1-201ENST00000434718 346 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 ARL2BPP10-201ENST00000446487 531 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AL356981.1-201ENST00000454879 684 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC007967.1-201ENST00000455422 1159 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC010285.1-201ENST00000470580 392 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AP000926.1-201ENST00000479573 241 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 RN7SL558P-201ENST00000497468 299 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC091868.1-201ENST00000508746 304 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 RNU6-798P-201ENST00000516912 103 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 RNU6-835P-201ENST00000516974 104 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC011611.1-201ENST00000552179 197 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AL121821.2-201ENST00000556081 394 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 MIR5699-201ENST00000578903 90 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC010205.1-201ENST00000616668 449 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 MIR7703-201ENST00000620784 77 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 C2orf27A-204ENST00000623058 969 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 AL159972.1-201ENST00000625150 448 ntBASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.54□□□□□ -1.68
CLIP3Q96DZ5 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms