Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 RNU6-1155P-201ENST00000363554 107 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 Y_RNA.517-201ENST00000384551 106 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 Z98941.1-201ENST00000407764 100 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 RNU6-248P-201ENST00000410720 107 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 CYCSP19-201ENST00000411715 316 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 HMGN1P24-201ENST00000412282 298 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 RAD23BP2-201ENST00000416003 1207 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 EI24P1-201ENST00000416584 867 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 USP9YP7-201ENST00000436723 430 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AL049734.2-201ENST00000441066 616 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 RAC1P7-201ENST00000445367 377 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 USP9YP32-201ENST00000452432 430 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 RNA5SP179-201ENST00000517284 121 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 MTCYBP20-201ENST00000524239 1129 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AC018630.1-201ENST00000541376 925 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AC107016.1-201ENST00000550463 337 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 HMGN1P30-201ENST00000589286 268 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AC091167.4-201ENST00000605079 184 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 NDUFA8P1-201ENST00000605525 367 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 Z99129.1-201ENST00000612510 255 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 AC110994.2-201ENST00000635481 492 ntBASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.71□□□□□ -1.66
CHMP4CQ96CF2 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 UBE3AP2-201ENST00000429033 2259 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 RNY4P34-201ENST00000364779 95 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 RNA5SP235-201ENST00000365411 114 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 RNU2-8P-201ENST00000410727 190 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 HMGN2P21-201ENST00000447764 270 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 MTND1P3-201ENST00000484956 952 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC055855.1-201ENST00000489563 579 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 SAP18P1-201ENST00000512058 390 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 Y_RNA.672-201ENST00000516289 104 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 HMGN1P28-201ENST00000521340 364 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 MED28P5-201ENST00000528254 438 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC006130.2-201ENST00000586202 326 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 VN1R79P-201ENST00000593540 513 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC073648.5-201ENST00000603502 305 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC090578.1-201ENST00000604955 591 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AL355472.4-201ENST00000610233 626 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC090970.3-201ENST00000612566 866 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC012150.2-201ENST00000621300 544 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AL159972.1-201ENST00000625150 448 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 AC244258.1-201ENST00000637553 1071 ntBASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.7□□□□□ -1.66
CHMP4CQ96CF2 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 AC004925.1-201ENST00000624256 2706 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 AC092447.7-201ENST00000422212 1621 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 FARSBP1-201ENST00000435808 1778 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 MFSD8-236ENST00000641509 4050 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 GNG5P1-201ENST00000255500 204 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 AMD1P2-201ENST00000412936 992 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 MTND1P21-201ENST00000412991 285 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 C1DP2-201ENST00000418167 426 ntBASIC4.69□□□□□ -1.66
CHMP4CQ96CF2 OR1AA1P-201ENST00000419597 916 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms