Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC009237.8-201ENST00000445492 379 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 MRPL50P4-201ENST00000446432 475 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AL451050.1-201ENST00000450126 415 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 SNRPGP5-201ENST00000456003 220 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RPS26P28-201ENST00000470806 348 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC044810.1-201ENST00000480271 711 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RN7SL570P-201ENST00000484405 292 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC083904.1-201ENST00000487828 231 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC113367.2-201ENST00000505749 160 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC112206.3-201ENST00000514578 389 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RNA5SP471-201ENST00000516971 106 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 IGKV2D-19-201ENST00000523346 262 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC051619.2-201ENST00000559063 397 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RPS3AP23-202ENST00000574601 686 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RN7SL652P-201ENST00000577769 300 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC012368.3-201ENST00000604190 219 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 MIR8080-201ENST00000622224 89 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 Y_RNA.167-201ENST00000363735 109 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RNU6-512P-201ENST00000364438 103 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RNU6-831P-201ENST00000384548 107 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 SNORA16.2-201ENST00000390991 127 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AL583835.1-201ENST00000399570 407 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 U3.32-201ENST00000408116 212 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RNA5SP39-201ENST00000411245 120 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 NDUFB4P5-201ENST00000415445 361 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AL669831.1-202ENST00000428504 417 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 GTF2IP13-201ENST00000438487 386 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 PTMAP6-201ENST00000439110 327 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RPL7AP61-201ENST00000443410 636 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC002553.3-201ENST00000453002 341 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 PPP1R2P5-201ENST00000457256 603 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RPL21P41-201ENST00000459863 264 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 DYNLL1P5-201ENST00000467158 270 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RPL21P93-201ENST00000480465 489 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AP002453.1-201ENST00000492327 668 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RN7SL362P-201ENST00000494228 267 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC103851.1-201ENST00000506833 274 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 RNU2-69P-201ENST00000516061 100 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC105029.1-201ENST00000520250 669 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 TRIM77BP-201ENST00000524985 1119 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC090115.3-201ENST00000553218 849 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AL049839.1-201ENST00000556151 657 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 MIR548AC-201ENST00000585049 88 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC025946.2-201ENST00000603398 234 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 AC011626.1-201ENST00000604710 562 ntBASIC4.11□□□□□ -1.75
CLRN3Q8NCR9 MIR6813-201ENST00000621638 56 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms