Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-744P-201ENST00000365557 107 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-74P-201ENST00000384235 107 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-1316P-201ENST00000384242 108 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 EIF5P1-201ENST00000400019 1231 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 PRRC2CP1-201ENST00000404428 159 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC078974.1-201ENST00000411597 223 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 MTND2P23-201ENST00000422990 651 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AL353729.1-201ENST00000425044 720 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 YME1L1P1-201ENST00000429435 297 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 RPL36AP53-201ENST00000432891 316 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 RPL23AP74-201ENST00000437246 471 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC005912.1-201ENST00000495392 255 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 SNORD60.2-201ENST00000516883 86 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC022861.1-201ENST00000522981 663 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC025627.2-201ENST00000576220 160 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC069200.1-201ENST00000609511 323 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC243654.2-201ENST00000612843 443 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC005858.4-201ENST00000623191 700 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 MIR1302-1-201ENST00000637932 143 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 AC093775.1-201ENST00000624154 1868 ntBASIC5.37□□□□□ -1.55
USHBP1Q8N6Y0 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC126323.6-202ENST00000568092 3511 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-1097P-201ENST00000363586 107 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 RNY1P12-201ENST00000364251 105 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 MIR200C-201ENST00000384980 68 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-510P-201ENST00000391239 108 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 ARF4P3-201ENST00000397387 509 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AL162578.1-201ENST00000406202 378 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 PRELID3BP11-201ENST00000414230 479 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AL353678.1-201ENST00000422735 741 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC019097.1-201ENST00000424783 735 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 MTCO3P46-201ENST00000425787 232 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 MRPL50P4-201ENST00000446432 475 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 RPS20P32-201ENST00000456044 356 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 RN7SL323P-201ENST00000494712 295 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC063950.1-201ENST00000552036 308 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC068714.1-201ENST00000559623 800 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 SULT1C2P2-201ENST00000562517 294 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 HMGB1P6-201ENST00000569046 646 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 LARP7P2-201ENST00000575306 125 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AL360085.1-201ENST00000604713 532 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 uc_338.5-201ENST00000611839 155 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 RMST_7.1-201ENST00000621935 268 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 TPTEP1-208ENST00000636884 213 ntBASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USHBP1Q8N6Y0 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 SNORD35B-201ENST00000363660 87 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 Y_RNA.333-201ENST00000365274 102 ntBASIC5.35□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-108P-201ENST00000365558 107 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms