Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 MIR3670-2-201ENST00000582974 65 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 MIR3670-1-201ENST00000584160 65 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 MIR3670-3-201ENST00000584855 65 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC007687.1-201ENST00000602704 304 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC136443.5-201ENST00000603741 370 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC006023.2-201ENST00000609916 167 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 MIR3670-4-201ENST00000612260 65 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC002546.1-201ENST00000588041 2504 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CHD9Q3L8U1 RNA5SP181-201ENST00000410246 98 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AC005517.2-201ENST00000424673 553 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 HMGB1P45-201ENST00000435986 653 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 RN7SL274P-201ENST00000492268 272 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 HMGN1P28-201ENST00000521340 364 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AL731537.2-201ENST00000561565 951 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 MIR3186-201ENST00000577404 85 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.66□□□□□ -2.14
CHD9Q3L8U1 SNORD48-201ENST00000364953 64 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
CHD9Q3L8U1 RNU6-1032P-201ENST00000384100 107 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AC073310.1-201ENST00000423226 1033 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AC109486.1-201ENST00000486833 374 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AC005951.1-201ENST00000576706 485 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 AL627309.6-201ENST00000606857 840 ntBASIC1.66□□□□□ -2.14
CHD9Q3L8U1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.66□□□□□ -2.14
CHD9Q3L8U1 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.65□□□□□ -2.14
CHD9Q3L8U1 SNORD6-201ENST00000365444 73 ntBASIC1.65□□□□□ -2.14
CHD9Q3L8U1 RNU6-328P-201ENST00000390887 106 ntBASIC1.65□□□□□ -2.14
CHD9Q3L8U1 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.65□□□□□ -2.14
CHD9Q3L8U1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.65□□□□□ -2.14
CHD9Q3L8U1 RPS29P1-201ENST00000465274 159 ntBASIC1.65□□□□□ -2.14
CHD9Q3L8U1 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
CHD9Q3L8U1 RNA5SP385-201ENST00000515947 110 ntBASIC1.65□□□□□ -2.14
CHD9Q3L8U1 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.65□□□□□ -2.14
CHD9Q3L8U1 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC1.65□□□□□ -2.14
CHD9Q3L8U1 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.65□□□□□ -2.14
CHD9Q3L8U1 NR1H5P-201ENST00000452683 1377 ntBASIC1.65□□□□□ -2.14
CHD9Q3L8U1 RNA5SP138-201ENST00000365098 114 ntBASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 IPMKP1-201ENST00000425988 855 ntBASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AC090453.1-201ENST00000495560 436 ntBASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 MIR502-201ENST00000606349 86 ntBASIC1.65□□□□□ -2.15
CHD9Q3L8U1 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AC079203.1-201ENST00000487972 404 ntBASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AC016957.1-201ENST00000534895 309 ntBASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.65□□□□□ -2.15
CHD9Q3L8U1 RNU6-84P-201ENST00000607737 102 ntBASIC1.65□□□□□ -2.15
CHD9Q3L8U1 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 RNU6-1080P-201ENST00000383982 107 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 RNU6-1334P-201ENST00000516032 105 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 AP002967.1-201ENST00000624203 539 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 MAPK10-266ENST00000641066 6555 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 RNU1-22P-201ENST00000363334 158 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 MIR517C-201ENST00000385103 95 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 RPS29P29-201ENST00000456396 171 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 AC069528.1-202ENST00000482888 637 ntBASIC1.64□□□□□ -2.15
CHD9Q3L8U1 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.64□□□□□ -2.15
CHD9Q3L8U1 MIR365B-201ENST00000362317 111 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 RN7SKP101-201ENST00000411376 320 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 MTCYBP7-201ENST00000419540 1134 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.63□□□□□ -2.15
CHD9Q3L8U1 MTATP6P3-201ENST00000581686 676 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CHD9Q3L8U1 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC1.63□□□□□ -2.15
CHD9Q3L8U1 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CHD9Q3L8U1 AL354695.1-201ENST00000427935 228 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 RPL21P2-201ENST00000440049 481 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 RPL39P40-201ENST00000445481 146 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 AC009474.2-201ENST00000451383 136 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC1.63□□□□□ -2.15
CHD9Q3L8U1 AC022790.1-201ENST00000522872 204 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 AL157834.3-201ENST00000615543 103 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 OR4G11P-202ENST00000642116 1414 ntBASIC1.63□□□□□ -2.15
CHD9Q3L8U1 EXOC5P1-201ENST00000510543 1969 ntBASIC1.62□□□□□ -2.15
CHD9Q3L8U1 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.62□□□□□ -2.15
CHD9Q3L8U1 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.62□□□□□ -2.15
CHD9Q3L8U1 CALM1P2-201ENST00000452941 448 ntBASIC1.62□□□□□ -2.15
CHD9Q3L8U1 EIF2S2P4-201ENST00000461070 984 ntBASIC1.62□□□□□ -2.15
CHD9Q3L8U1 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC1.62□□□□□ -2.15
CHD9Q3L8U1 AP005660.1-201ENST00000522972 293 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms