Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 BTF3L4P4-201ENST00000506381 449 ntBASIC4.1□□□□□ -1.75
CTCFP49711 LTV1P1-201ENST00000510683 1237 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AC021146.1-201ENST00000511202 716 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.1□□□□□ -1.75
CTCFP49711 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.1□□□□□ -1.75
CTCFP49711 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.1□□□□□ -1.75
CTCFP49711 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.1□□□□□ -1.75
CTCFP49711 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.1□□□□□ -1.75
CTCFP49711 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.1□□□□□ -1.75
CTCFP49711 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.1□□□□□ -1.75
CTCFP49711 OR7K1P-201ENST00000546439 926 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.1□□□□□ -1.75
CTCFP49711 AC004987.4-201ENST00000603383 338 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AC006329.2-201ENST00000611491 394 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AC022079.1-201ENST00000621546 602 ntBASIC4.1□□□□□ -1.75
CTCFP49711 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.1□□□□□ -1.75
CTCFP49711 AC004009.2-201ENST00000623016 728 ntBASIC4.1□□□□□ -1.75
CTCFP49711 AC048347.1-201ENST00000624621 427 ntBASIC4.1□□□□□ -1.75
CTCFP49711 U6.98-201ENST00000637157 84 ntBASIC4.1□□□□□ -1.75
CTCFP49711 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CTCFP49711 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.1□□□□□ -1.75
CTCFP49711 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.1□□□□□ -1.75
CTCFP49711 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.1□□□□□ -1.75
CTCFP49711 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CTCFP49711 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
CTCFP49711 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CTCFP49711 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CTCFP49711 AC007256.1-201ENST00000392253 2765 ntBASIC4.09□□□□□ -1.75
CTCFP49711 AL136360.1-201ENST00000503377 1900 ntBASIC4.09□□□□□ -1.75
CTCFP49711 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CTCFP49711 RNU1-18P-201ENST00000363062 164 ntBASIC4.09□□□□□ -1.75
CTCFP49711 Y_RNA.169-201ENST00000363745 96 ntBASIC4.09□□□□□ -1.75
CTCFP49711 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CTCFP49711 RNU6-952P-201ENST00000391164 108 ntBASIC4.09□□□□□ -1.75
CTCFP49711 RNU4-72P-201ENST00000410754 173 ntBASIC4.09□□□□□ -1.75
CTCFP49711 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.09□□□□□ -1.75
CTCFP49711 NPM1P11-201ENST00000417106 855 ntBASIC4.09□□□□□ -1.75
CTCFP49711 BX890604.2-201ENST00000427883 474 ntBASIC4.09□□□□□ -1.75
CTCFP49711 MRPS18BP2-201ENST00000434310 759 ntBASIC4.09□□□□□ -1.75
CTCFP49711 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.09□□□□□ -1.75
CTCFP49711 KRTAP19-11P-201ENST00000439851 104 ntBASIC4.09□□□□□ -1.75
CTCFP49711 TXNP1-201ENST00000441872 371 ntBASIC4.09□□□□□ -1.75
CTCFP49711 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.09□□□□□ -1.75
CTCFP49711 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 RPS20P24-201ENST00000457473 361 ntBASIC4.09□□□□□ -1.75
CTCFP49711 AC078785.3-201ENST00000476607 425 ntBASIC4.09□□□□□ -1.75
CTCFP49711 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.09□□□□□ -1.75
CTCFP49711 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CTCFP49711 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.09□□□□□ -1.75
CTCFP49711 RAC1P2-201ENST00000511164 579 ntBASIC4.09□□□□□ -1.75
CTCFP49711 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.09□□□□□ -1.75
CTCFP49711 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.09□□□□□ -1.75
CTCFP49711 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.09□□□□□ -1.75
CTCFP49711 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.09□□□□□ -1.75
CTCFP49711 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 AP000811.1-201ENST00000603803 651 ntBASIC4.09□□□□□ -1.75
CTCFP49711 AC090425.2-201ENST00000608818 501 ntBASIC4.09□□□□□ -1.75
CTCFP49711 AC006023.2-201ENST00000609916 167 ntBASIC4.09□□□□□ -1.75
CTCFP49711 AC040168.1-201ENST00000623594 991 ntBASIC4.09□□□□□ -1.75
CTCFP49711 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.09□□□□□ -1.75
CTCFP49711 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CTCFP49711 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
CTCFP49711 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.09□□□□□ -1.76
CTCFP49711 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.08□□□□□ -1.76
CTCFP49711 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CTCFP49711 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CTCFP49711 RNU6-433P-201ENST00000363216 104 ntBASIC4.08□□□□□ -1.76
CTCFP49711 RNU6-343P-201ENST00000364709 104 ntBASIC4.08□□□□□ -1.76
CTCFP49711 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CTCFP49711 RNU5A-2P-201ENST00000384337 116 ntBASIC4.08□□□□□ -1.76
CTCFP49711 MIR504-201ENST00000385065 83 ntBASIC4.08□□□□□ -1.76
CTCFP49711 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CTCFP49711 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CTCFP49711 AC127526.1-201ENST00000417526 366 ntBASIC4.08□□□□□ -1.76
CTCFP49711 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC4.08□□□□□ -1.76
CTCFP49711 NEK4P1-201ENST00000433383 879 ntBASIC4.08□□□□□ -1.76
CTCFP49711 AL022578.1-201ENST00000439330 1433 ntBASIC4.08□□□□□ -1.76
CTCFP49711 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.08□□□□□ -1.76
CTCFP49711 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.08□□□□□ -1.76
CTCFP49711 AC010655.1-201ENST00000449336 292 ntBASIC4.08□□□□□ -1.76
CTCFP49711 AC006480.1-201ENST00000449887 378 ntBASIC4.08□□□□□ -1.76
CTCFP49711 SUMO2P2-201ENST00000456482 255 ntBASIC4.08□□□□□ -1.76
CTCFP49711 U3.44-201ENST00000458938 192 ntBASIC4.08□□□□□ -1.76
CTCFP49711 MEMO1P3-201ENST00000459811 302 ntBASIC4.08□□□□□ -1.76
CTCFP49711 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.08□□□□□ -1.76
CTCFP49711 RPL7P24-201ENST00000493052 752 ntBASIC4.08□□□□□ -1.76
CTCFP49711 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.08□□□□□ -1.76
CTCFP49711 AC087359.1-201ENST00000508335 1740 ntBASIC4.08□□□□□ -1.76
CTCFP49711 MTCYBP43-201ENST00000513621 740 ntBASIC4.08□□□□□ -1.76
CTCFP49711 RNU6-27P-201ENST00000516146 107 ntBASIC4.08□□□□□ -1.76
CTCFP49711 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.08□□□□□ -1.76
CTCFP49711 IGKV2-26-201ENST00000518305 343 ntBASIC4.08□□□□□ -1.76
CTCFP49711 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
CTCFP49711 AC022861.1-201ENST00000522981 663 ntBASIC4.08□□□□□ -1.76
CTCFP49711 AP002404.1-201ENST00000532005 451 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms