Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX1P28360 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX1P28360 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX1P28360 MIR133A2-201ENST00000347538 102 ntBASIC5.34□□□□□ -1.55
MSX1P28360 MIR375-201ENST00000362103 64 ntBASIC5.34□□□□□ -1.55
MSX1P28360 RNU6-595P-201ENST00000363944 107 ntBASIC5.34□□□□□ -1.55
MSX1P28360 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
MSX1P28360 RPL11P3-201ENST00000395256 523 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AL391361.1-201ENST00000405580 489 ntBASIC5.34□□□□□ -1.55
MSX1P28360 RNU6-607P-201ENST00000411283 108 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AL451074.5-201ENST00000415894 435 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX1P28360 GNG5P5-201ENST00000420444 220 ntBASIC5.34□□□□□ -1.55
MSX1P28360 RPS12P17-201ENST00000438591 377 ntBASIC5.34□□□□□ -1.55
MSX1P28360 NDUFB4P10-201ENST00000452541 359 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AC006539.1-201ENST00000481419 501 ntBASIC5.34□□□□□ -1.55
MSX1P28360 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX1P28360 AC008716.1-201ENST00000511084 513 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AC107393.1-201ENST00000512403 346 ntBASIC5.34□□□□□ -1.55
MSX1P28360 HIGD1AP5-201ENST00000529959 259 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AP002392.1-201ENST00000537692 208 ntBASIC5.34□□□□□ -1.55
MSX1P28360 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.34□□□□□ -1.55
MSX1P28360 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.34□□□□□ -1.55
MSX1P28360 AC022404.1-201ENST00000555320 273 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.34□□□□□ -1.55
MSX1P28360 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX1P28360 AC010547.6-201ENST00000571789 193 ntBASIC5.34□□□□□ -1.55
MSX1P28360 MIR4489-201ENST00000578869 62 ntBASIC5.34□□□□□ -1.55
MSX1P28360 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.34□□□□□ -1.55
MSX1P28360 AL121917.1-203ENST00000605534 577 ntBASIC5.34□□□□□ -1.55
MSX1P28360 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC5.34□□□□□ -1.55
MSX1P28360 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.34□□□□□ -1.55
MSX1P28360 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX1P28360 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
MSX1P28360 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
MSX1P28360 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSX1P28360 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
MSX1P28360 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
MSX1P28360 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.34□□□□□ -1.56
MSX1P28360 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
MSX1P28360 AL359893.1-201ENST00000447628 1580 ntBASIC5.33□□□□□ -1.56
MSX1P28360 MAPK10-338ENST00000641647 3362 ntBASIC5.33□□□□□ -1.56
MSX1P28360 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX1P28360 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
MSX1P28360 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX1P28360 AC239868.2-201ENST00000564237 4527 ntBASIC5.33□□□□□ -1.56
MSX1P28360 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
MSX1P28360 Y_RNA.199-201ENST00000364014 102 ntBASIC5.33□□□□□ -1.56
MSX1P28360 RNU6-1081P-201ENST00000384537 107 ntBASIC5.33□□□□□ -1.56
MSX1P28360 MIR578-201ENST00000384828 96 ntBASIC5.33□□□□□ -1.56
MSX1P28360 RNU6-493P-201ENST00000391321 108 ntBASIC5.33□□□□□ -1.56
MSX1P28360 CYB5AP4-201ENST00000396692 399 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AC013442.1-201ENST00000397347 228 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AC092447.6-201ENST00000414578 210 ntBASIC5.33□□□□□ -1.56
MSX1P28360 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX1P28360 AC126120.1-201ENST00000431082 470 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AL159987.2-201ENST00000432754 307 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.33□□□□□ -1.56
MSX1P28360 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX1P28360 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX1P28360 AC087190.1-201ENST00000484462 480 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AC107032.1-201ENST00000485945 480 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AC074250.1-201ENST00000511117 192 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AC074255.1-201ENST00000511259 501 ntBASIC5.33□□□□□ -1.56
MSX1P28360 SNORA31.3-201ENST00000516029 96 ntBASIC5.33□□□□□ -1.56
MSX1P28360 SNORA70.20-201ENST00000516848 126 ntBASIC5.33□□□□□ -1.56
MSX1P28360 RN7SKP258-201ENST00000517151 304 ntBASIC5.33□□□□□ -1.56
MSX1P28360 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX1P28360 MIR4300-201ENST00000581016 96 ntBASIC5.33□□□□□ -1.56
MSX1P28360 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX1P28360 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 MIR376A1-201ENST00000616574 68 ntBASIC5.33□□□□□ -1.56
MSX1P28360 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX1P28360 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.33□□□□□ -1.56
MSX1P28360 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.33□□□□□ -1.56
MSX1P28360 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
MSX1P28360 AC109446.4-201ENST00000623235 2755 ntBASIC5.33□□□□□ -1.56
MSX1P28360 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX1P28360 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 SNORD50B-201ENST00000364995 70 ntBASIC5.32□□□□□ -1.56
MSX1P28360 AC019155.1-201ENST00000382242 574 ntBASIC5.32□□□□□ -1.56
MSX1P28360 MT-TC-201ENST00000387405 66 ntBASIC5.32□□□□□ -1.56
MSX1P28360 RNU6-821P-201ENST00000390995 107 ntBASIC5.32□□□□□ -1.56
MSX1P28360 RPS29P13-201ENST00000402041 169 ntBASIC5.32□□□□□ -1.56
MSX1P28360 HSPE1P8-201ENST00000406997 288 ntBASIC5.32□□□□□ -1.56
MSX1P28360 MIR1178-201ENST00000408396 91 ntBASIC5.32□□□□□ -1.56
MSX1P28360 OR3A2-201ENST00000408891 1076 ntBASIC5.32□□□□□ -1.56
MSX1P28360 CYCSP33-201ENST00000414485 327 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms