Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL5A3P25940 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.35□□□□□ -2.03
COL5A3P25940 AC245128.3-201ENST00000594721 748 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 AC009314.1-201ENST00000603871 304 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 AL359821.1-201ENST00000605519 182 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 AC010678.1-201ENST00000614118 713 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.35□□□□□ -2.03
COL5A3P25940 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL5A3P25940 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.35□□□□□ -2.03
COL5A3P25940 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.34□□□□□ -2.03
COL5A3P25940 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
COL5A3P25940 RNU6-891P-201ENST00000384280 111 ntBASIC2.34□□□□□ -2.03
COL5A3P25940 RNA5SP181-201ENST00000410246 98 ntBASIC2.34□□□□□ -2.03
COL5A3P25940 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.34□□□□□ -2.03
COL5A3P25940 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.34□□□□□ -2.03
COL5A3P25940 AL138799.3-201ENST00000438968 350 ntBASIC2.34□□□□□ -2.03
COL5A3P25940 RPL21P2-201ENST00000440049 481 ntBASIC2.34□□□□□ -2.03
COL5A3P25940 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.34□□□□□ -2.03
COL5A3P25940 SNORA31.15-201ENST00000516771 132 ntBASIC2.34□□□□□ -2.03
COL5A3P25940 RN7SKP96-201ENST00000516948 297 ntBASIC2.34□□□□□ -2.03
COL5A3P25940 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.34□□□□□ -2.03
COL5A3P25940 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC2.34□□□□□ -2.03
COL5A3P25940 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.34□□□□□ -2.03
COL5A3P25940 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.34□□□□□ -2.03
COL5A3P25940 SNORA51.11-201ENST00000384442 131 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 AC019129.1-201ENST00000403786 261 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 BTBD10P2-201ENST00000404779 676 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.34□□□□□ -2.04
COL5A3P25940 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.34□□□□□ -2.04
COL5A3P25940 AL590623.1-201ENST00000427864 105 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.34□□□□□ -2.04
COL5A3P25940 HMGB1P31-201ENST00000437242 427 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 MTCYBP12-201ENST00000440559 1134 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 RNA5SP480-201ENST00000516840 109 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC2.34□□□□□ -2.04
COL5A3P25940 HMGN1P28-201ENST00000521340 364 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC2.34□□□□□ -2.04
COL5A3P25940 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.34□□□□□ -2.04
COL5A3P25940 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.34□□□□□ -2.04
COL5A3P25940 MIR4716-201ENST00000579628 84 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.34□□□□□ -2.04
COL5A3P25940 BX322635.1-201ENST00000605804 496 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 AL391813.2-201ENST00000609113 322 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 VIS1.1-201ENST00000610517 203 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 RMST_5.1-201ENST00000618704 126 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 AC119674.1-220ENST00000641502 1048 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 ZNF720P1-201ENST00000562403 1939 ntBASIC2.34□□□□□ -2.04
COL5A3P25940 AP001486.2-201ENST00000561652 5113 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.33□□□□□ -2.04
COL5A3P25940 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL5A3P25940 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL5A3P25940 RNA5SP160-201ENST00000364866 120 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 EIF1AXP1-201ENST00000419267 435 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.33□□□□□ -2.04
COL5A3P25940 AC093716.1-201ENST00000435923 377 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.33□□□□□ -2.04
COL5A3P25940 AC104629.2-201ENST00000468627 598 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 AC140059.1-201ENST00000489238 361 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 AC079804.2-201ENST00000490376 200 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 AC108078.2-201ENST00000510750 236 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 AC108120.2-201ENST00000512973 294 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.33□□□□□ -2.04
COL5A3P25940 AC117525.1-201ENST00000515228 503 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 AC126177.3-201ENST00000551839 688 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 AC009268.1-201ENST00000561352 1203 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 RPL23AP88-201ENST00000605759 454 ntBASIC2.33□□□□□ -2.04
COL5A3P25940 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.33□□□□□ -2.04
COL5A3P25940 AL139811.1-201ENST00000424779 2299 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC2.32□□□□□ -2.04
COL5A3P25940 SNORA25.9-201ENST00000365087 128 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 RNU2-17P-201ENST00000410290 190 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 RNA5SP498-201ENST00000411342 120 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 SNORD108-201ENST00000459332 71 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
COL5A3P25940 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.32□□□□□ -2.04
COL5A3P25940 AC011352.3-201ENST00000505162 593 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.32□□□□□ -2.04
COL5A3P25940 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.32□□□□□ -2.04
COL5A3P25940 SUB1P3-201ENST00000564581 315 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC2.32□□□□□ -2.04
COL5A3P25940 AC022387.2-201ENST00000604050 448 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 AC012467.1-201ENST00000607740 256 ntBASIC2.32□□□□□ -2.04
COL5A3P25940 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL5A3P25940 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
COL5A3P25940 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
COL5A3P25940 SET-203ENST00000372688 801 ntTSL 2 BASIC2.31□□□□□ -2.04
COL5A3P25940 MIR92A2-201ENST00000385299 75 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 RNU2-20P-201ENST00000410425 191 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 BTF3P4-201ENST00000418852 495 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL590762.3-201ENST00000436372 640 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 CASP3P1-201ENST00000446037 609 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.31□□□□□ -2.04
COL5A3P25940 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.31□□□□□ -2.04
COL5A3P25940 SNORA25.15-201ENST00000516487 89 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC010735.1-201ENST00000567305 1026 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.6-201ENST00000603753 252 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.11-201ENST00000604059 253 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AL670379.10-201ENST00000604330 253 ntBASIC2.31□□□□□ -2.04
COL5A3P25940 AC008162.1-201ENST00000604718 254 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms