Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.55□□□□□ -2
USF1P22415 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.55□□□□□ -2
USF1P22415 RPL23AP74-201ENST00000437246 471 ntBASIC2.55□□□□□ -2
USF1P22415 MUPP-201ENST00000438111 566 ntBASIC2.55□□□□□ -2
USF1P22415 ARF4P4-201ENST00000439608 520 ntBASIC2.55□□□□□ -2
USF1P22415 GAPDHP27-201ENST00000447427 1020 ntBASIC2.55□□□□□ -2
USF1P22415 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.55□□□□□ -2
USF1P22415 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.55□□□□□ -2
USF1P22415 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC2.55□□□□□ -2
USF1P22415 TAB3P1-202ENST00000452645 1634 ntBASIC2.55□□□□□ -2
USF1P22415 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC2.55□□□□□ -2
USF1P22415 AL359385.1-201ENST00000456509 365 ntBASIC2.55□□□□□ -2
USF1P22415 AC083906.5-201ENST00000503722 328 ntBASIC2.55□□□□□ -2
USF1P22415 VN1R104P-201ENST00000505115 1009 ntBASIC2.55□□□□□ -2
USF1P22415 COX7A2P2-201ENST00000505291 250 ntBASIC2.55□□□□□ -2
USF1P22415 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.55□□□□□ -2
USF1P22415 RNA5SP367-201ENST00000516557 118 ntBASIC2.55□□□□□ -2
USF1P22415 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.55□□□□□ -2
USF1P22415 OR5AK1P-201ENST00000524837 922 ntBASIC2.55□□□□□ -2
USF1P22415 MTCO3P15-201ENST00000526563 574 ntBASIC2.55□□□□□ -2
USF1P22415 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.55□□□□□ -2
USF1P22415 AC087894.1-201ENST00000538359 518 ntBASIC2.55□□□□□ -2
USF1P22415 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.55□□□□□ -2
USF1P22415 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.55□□□□□ -2
USF1P22415 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.55□□□□□ -2
USF1P22415 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.55□□□□□ -2
USF1P22415 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.55□□□□□ -2
USF1P22415 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.55□□□□□ -2
USF1P22415 AC106791.2-201ENST00000604680 391 ntBASIC2.55□□□□□ -2
USF1P22415 U6.101-201ENST00000637707 76 ntBASIC2.55□□□□□ -2
USF1P22415 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.55□□□□□ -2
USF1P22415 OR4G11P-202ENST00000642116 1414 ntBASIC2.55□□□□□ -2
USF1P22415 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USF1P22415 AC011460.1-201ENST00000636268 1834 ntBASIC2.54□□□□□ -2
USF1P22415 AC093831.2-201ENST00000624393 3427 ntBASIC2.54□□□□□ -2
USF1P22415 AC004944.1-201ENST00000517807 3059 ntBASIC2.54□□□□□ -2
USF1P22415 Z99496.1-201ENST00000469424 1477 ntBASIC2.54□□□□□ -2
USF1P22415 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.54□□□□□ -2
USF1P22415 OR5J1P-201ENST00000313544 939 ntBASIC2.54□□□□□ -2
USF1P22415 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC2.54□□□□□ -2
USF1P22415 SNORA46-201ENST00000384762 135 ntBASIC2.54□□□□□ -2
USF1P22415 SNORD67-201ENST00000390833 111 ntBASIC2.54□□□□□ -2
USF1P22415 RNU6-882P-201ENST00000391025 103 ntBASIC2.54□□□□□ -2
USF1P22415 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.54□□□□□ -2
USF1P22415 BTF3P8-201ENST00000414577 526 ntBASIC2.54□□□□□ -2
USF1P22415 AC245054.2-201ENST00000415639 319 ntBASIC2.54□□□□□ -2
USF1P22415 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC2.54□□□□□ -2
USF1P22415 RPL27AP8-201ENST00000424277 446 ntBASIC2.54□□□□□ -2
USF1P22415 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.54□□□□□ -2
USF1P22415 AL121871.1-201ENST00000443413 436 ntBASIC2.54□□□□□ -2
USF1P22415 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.54□□□□□ -2
USF1P22415 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC2.54□□□□□ -2
USF1P22415 UQCRHP3-201ENST00000451503 251 ntBASIC2.54□□□□□ -2
USF1P22415 RN7SL75P-201ENST00000461926 281 ntBASIC2.54□□□□□ -2
USF1P22415 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.54□□□□□ -2
USF1P22415 AC008837.1-201ENST00000511513 412 ntBASIC2.54□□□□□ -2
USF1P22415 SCGB1D5P-201ENST00000515134 247 ntBASIC2.54□□□□□ -2
USF1P22415 SNORA70.16-201ENST00000516390 95 ntBASIC2.54□□□□□ -2
USF1P22415 RNU6-1261P-201ENST00000517194 104 ntBASIC2.54□□□□□ -2
USF1P22415 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.54□□□□□ -2
USF1P22415 OR10V3P-201ENST00000525712 725 ntBASIC2.54□□□□□ -2
USF1P22415 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.54□□□□□ -2
USF1P22415 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC2.54□□□□□ -2
USF1P22415 AC107016.2-201ENST00000547968 190 ntBASIC2.54□□□□□ -2
USF1P22415 CR383656.7-201ENST00000548164 174 ntBASIC2.54□□□□□ -2
USF1P22415 SETP2-201ENST00000553886 926 ntBASIC2.54□□□□□ -2
USF1P22415 GTF3AP2-201ENST00000557014 266 ntBASIC2.54□□□□□ -2
USF1P22415 AC055876.1-202ENST00000567053 138 ntBASIC2.54□□□□□ -2
USF1P22415 AC245036.5-201ENST00000596330 847 ntBASIC2.54□□□□□ -2
USF1P22415 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.54□□□□□ -2
USF1P22415 AC091057.2-201ENST00000602594 792 ntBASIC2.54□□□□□ -2
USF1P22415 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.54□□□□□ -2
USF1P22415 AL031176.1-201ENST00000604554 466 ntBASIC2.54□□□□□ -2
USF1P22415 AP002826.1-201ENST00000608835 315 ntBASIC2.54□□□□□ -2
USF1P22415 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.54□□□□□ -2
USF1P22415 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
USF1P22415 MTND5P19-201ENST00000424872 1794 ntBASIC2.54□□□□□ -2
USF1P22415 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.53□□□□□ -2
USF1P22415 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
USF1P22415 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USF1P22415 NACA3P-201ENST00000359690 648 ntBASIC2.53□□□□□ -2
USF1P22415 RNU6-707P-201ENST00000364647 95 ntBASIC2.53□□□□□ -2
USF1P22415 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.53□□□□□ -2
USF1P22415 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
USF1P22415 AC110754.1-201ENST00000399740 601 ntBASIC2.53□□□□□ -2
USF1P22415 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.53□□□□□ -2
USF1P22415 RNU2-47P-201ENST00000410649 186 ntBASIC2.53□□□□□ -2
USF1P22415 RPS7P9-201ENST00000414704 586 ntBASIC2.53□□□□□ -2
USF1P22415 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2.53□□□□□ -2
USF1P22415 AC013262.1-201ENST00000426710 252 ntBASIC2.53□□□□□ -2
USF1P22415 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.53□□□□□ -2
USF1P22415 SEPT7P5-201ENST00000434048 306 ntBASIC2.53□□□□□ -2
USF1P22415 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2.53□□□□□ -2
USF1P22415 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.53□□□□□ -2
USF1P22415 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC2.53□□□□□ -2
USF1P22415 AC093155.1-201ENST00000440164 826 ntBASIC2.53□□□□□ -2
USF1P22415 RPS12P18-201ENST00000442381 270 ntBASIC2.53□□□□□ -2
USF1P22415 MTCYBP11-201ENST00000447254 1109 ntBASIC2.53□□□□□ -2
USF1P22415 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.53□□□□□ -2
USF1P22415 SUMO2P2-201ENST00000456482 255 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 137.1 ms