Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC091152.2-201ENST00000591628 2569 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 ZNF833P-201ENST00000424938 1494 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXC11O43248 AP001486.2-201ENST00000561652 5113 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RNU6-223P-201ENST00000362830 107 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RNU6-76P-201ENST00000384060 104 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RHEBP3-201ENST00000411920 351 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RPL17P12-201ENST00000413391 526 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC009518.2-201ENST00000418056 731 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RPL27AP8-201ENST00000424277 446 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
HOXC11O43248 SNORA71B-202ENST00000439232 272 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RABEPKP1-201ENST00000440529 1026 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC11O43248 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.91□□□□□ -1.78
HOXC11O43248 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC11O43248 AL049830.2-201ENST00000480072 201 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RPL7P24-201ENST00000493052 752 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC11O43248 CBX3P3-201ENST00000508108 532 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC11O43248 HMGN1P11-201ENST00000508668 303 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AL359273.1-201ENST00000510918 627 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC11O43248 AC008489.1-201ENST00000524271 483 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC11O43248 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC11O43248 AC055876.1-202ENST00000567053 138 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 MIR3944-201ENST00000581277 108 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC083760.1-201ENST00000589621 670 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC11O43248 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC11O43248 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC11O43248 AL590229.1-201ENST00000603497 542 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC106900.2-201ENST00000604994 317 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC105129.3-201ENST00000605455 485 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 RNU1-30P-201ENST00000606575 163 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AC004908.2-201ENST00000609090 574 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.91□□□□□ -1.78
HOXC11O43248 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC11O43248 MIR8058-201ENST00000615737 89 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 AL391261.4-201ENST00000616012 481 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
HOXC11O43248 AC112204.3-201ENST00000623822 332 ntBASIC3.91□□□□□ -1.78
HOXC11O43248 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
HOXC11O43248 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC11O43248 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.91□□□□□ -1.78
HOXC11O43248 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC11O43248 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HOXC11O43248 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HOXC11O43248 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
HOXC11O43248 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
HOXC11O43248 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.9□□□□□ -1.78
HOXC11O43248 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXC11O43248 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXC11O43248 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXC11O43248 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.9□□□□□ -1.78
HOXC11O43248 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC11O43248 RNU5A-1-201ENST00000362698 116 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC11O43248 RNU6-754P-201ENST00000391166 107 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
HOXC11O43248 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC11O43248 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC11O43248 AL035423.1-201ENST00000420331 213 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXC11O43248 AL390023.1-201ENST00000428836 262 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 YME1L1P1-201ENST00000429435 297 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC11O43248 GDI2P2-201ENST00000445131 608 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 TPT1P14-201ENST00000448018 505 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 PDSS1P2-201ENST00000449397 678 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXC11O43248 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC11O43248 AC116337.2-201ENST00000477662 156 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 AP000797.1-201ENST00000478870 387 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 AC109486.1-201ENST00000486833 374 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 RN7SKP13-201ENST00000515933 244 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 Y_RNA.688-201ENST00000516565 95 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 RNU6-1003P-201ENST00000517099 105 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 ERHP1-201ENST00000523006 310 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXC11O43248 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC11O43248 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC11O43248 COX6CP3-201ENST00000580869 223 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXC11O43248 AL022161.1-201ENST00000604390 213 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 AL031775.1-201ENST00000607014 887 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXC11O43248 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
HOXC11O43248 AF117829.1-206ENST00000621883 3802 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 AC004777.1-201ENST00000624317 287 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXC11O43248 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXC11O43248 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC11O43248 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.9□□□□□ -1.79
HOXC11O43248 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
HOXC11O43248 PRO1804-201ENST00000623780 2050 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms