Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PCDHA3Q9Y5H8 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-1085P-201ENST00000363576 107 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-1097P-201ENST00000363586 107 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 Y_RNA.256-201ENST00000364594 104 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 RNY3P13-201ENST00000365542 102 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-108P-201ENST00000365558 107 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 Y_RNA.402-201ENST00000383972 102 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-278P-201ENST00000390945 109 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AL583834.1-201ENST00000406943 343 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 FAR2P2-201ENST00000413041 594 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 CCDC58P2-201ENST00000417131 366 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 FAR2P4-202ENST00000425399 584 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 RPS29P17-201ENST00000430795 166 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 NANOGP10-201ENST00000453325 895 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 RPL31P61-201ENST00000496160 376 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC090572.1-201ENST00000519251 160 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AL133153.1-201ENST00000557756 303 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AP001429.1-201ENST00000602568 530 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC012669.1-201ENST00000603209 283 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC012507.3-201ENST00000603556 477 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC008277.2-201ENST00000605196 797 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 AC009161.2-201ENST00000624626 138 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 MTCO1P9-201ENST00000505577 1534 ntBASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PCDHA3Q9Y5H8 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
PCDHA3Q9Y5H8 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.72
PCDHA3Q9Y5H8 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.72
PCDHA3Q9Y5H8 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 OR1S2-201ENST00000302592 978 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 Y_RNA.159-201ENST00000363674 87 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RNU6-637P-201ENST00000384050 107 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 Y_RNA.481-201ENST00000384373 102 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RNA5SP332-201ENST00000391063 115 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RNU6-712P-201ENST00000410558 100 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RNU6-516P-201ENST00000411381 104 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC016397.1-201ENST00000412463 242 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 HMGB3P20-201ENST00000417997 600 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AL137014.1-201ENST00000420490 1226 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC007283.2-201ENST00000424739 197 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 DNAJC19P7-201ENST00000428811 344 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 MTATP6P23-201ENST00000440153 476 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 MTND4P18-201ENST00000447010 465 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AL121877.1-201ENST00000453704 622 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RPL36AP13-201ENST00000457490 317 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC079382.1-201ENST00000493346 557 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 Y_RNA.693-201ENST00000516641 110 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RNU6-798P-201ENST00000516912 103 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 RAB9BP1-201ENST00000519581 626 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AL133271.1-201ENST00000538229 291 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 SUB1P2-201ENST00000556401 297 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC006504.3-201ENST00000586818 523 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC104662.1-201ENST00000604448 511 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 AC019193.2-201ENST00000610012 634 ntBASIC4.33□□□□□ -1.72
PCDHA3Q9Y5H8 MIR6798-201ENST00000612887 67 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 182.6 ms