Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS28Q9UK41 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS28Q9UK41 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS28Q9UK41 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS28Q9UK41 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC091152.2-201ENST00000591628 2569 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS28Q9UK41 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC058791.1-201ENST00000608412 3198 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 RAP1BP1-201ENST00000412709 553 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 MTND1P21-201ENST00000412991 285 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 HMGB1P11-201ENST00000413899 637 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 SYF2P2-201ENST00000417620 583 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC245054.1-201ENST00000420944 258 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 PPP1R11P2-201ENST00000423543 382 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 MTND1P20-201ENST00000430341 950 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC091286.1-201ENST00000431233 461 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 HSPD1P21-201ENST00000436541 245 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 HMGN2P20-201ENST00000437531 273 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC004263.1-201ENST00000479327 332 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC012181.1-201ENST00000479895 423 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 LTV1P1-201ENST00000510683 1237 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC022690.1-201ENST00000526681 550 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AP004247.1-201ENST00000531556 1289 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC013828.2-201ENST00000532487 235 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 ZNF321P-202ENST00000550843 495 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 MIR4738-201ENST00000579134 87 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 MIR4474-201ENST00000579189 78 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC010591.1-201ENST00000603941 649 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC106791.2-201ENST00000604680 391 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 RMST_8.1-201ENST00000610287 165 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AL592295.2-201ENST00000612578 206 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AL355493.4-201ENST00000618530 292 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC131159.1-201ENST00000621854 213 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC017037.3-201ENST00000625016 472 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 OR6C71P-202ENST00000641886 1107 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS28Q9UK41 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS28Q9UK41 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC009902.3-201ENST00000606235 2172 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC138915.3-201ENST00000562908 1389 ntBASIC3.73□□□□□ -1.81
VPS28Q9UK41 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC006504.1-201ENST00000562493 3666 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS28Q9UK41 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
VPS28Q9UK41 SNORD9-201ENST00000362566 104 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 RNU5A-1-201ENST00000362698 116 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 MIR449B-201ENST00000384995 97 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 RPS29P4-201ENST00000414733 161 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AL389915.1-201ENST00000422463 466 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 SNRPEP4-201ENST00000435815 279 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS28Q9UK41 OR6C5P-201ENST00000452388 923 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 SNORD105B-201ENST00000458770 79 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 RNU7-170P-201ENST00000459303 61 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC021146.5-201ENST00000503544 545 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 SLC25A15P5-201ENST00000508033 253 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 SNORA31.22-201ENST00000517204 135 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 RANP9-201ENST00000519957 271 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 HMGN1P28-201ENST00000521340 364 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS28Q9UK41 LRRC34P1-201ENST00000542742 915 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 MIR4425-201ENST00000580572 84 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC008739.3-201ENST00000603262 127 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC002076.2-201ENST00000617362 122 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC009093.8-201ENST00000641769 292 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC011460.1-201ENST00000636268 1834 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS28Q9UK41 AC007823.1-201ENST00000569932 1566 ntBASIC3.72□□□□□ -1.81
VPS28Q9UK41 CUL1P1-201ENST00000509510 2425 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms