Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CHMP4AQ9BY43 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AL356274.2-201ENST00000624379 3752 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC112653.1-201ENST00000443851 386 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 SNRPGP6-201ENST00000451124 220 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 MTND4LP3-201ENST00000468320 276 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC026784.1-201ENST00000507986 352 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 RNU6-840P-201ENST00000517275 65 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC125611.2-201ENST00000551907 647 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC107075.1-201ENST00000613695 314 ntBASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.55□□□□□ -1.68
CHMP4AQ9BY43 AC138915.1-201ENST00000565427 1685 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC007785.2-201ENST00000598627 1916 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RNA5SP50-201ENST00000363731 107 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RNA5SP42-201ENST00000364278 115 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RNA5SP72-201ENST00000364442 117 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RNU6-198P-201ENST00000384258 104 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RNU6-1207P-201ENST00000384343 107 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 MIR122-201ENST00000385044 85 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RNU6-754P-201ENST00000391166 107 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 MIR1289-1-201ENST00000408836 144 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 USP9YP33-201ENST00000412220 421 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 Z85995.1-201ENST00000415547 335 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 ZYG11AP1-201ENST00000430329 837 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 ATP5F1P1-201ENST00000433775 569 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AL512844.2-201ENST00000433990 593 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 USP9YP35-201ENST00000435696 412 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RN7SL293P-201ENST00000481765 281 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 NARSP2-201ENST00000518524 679 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AL132857.1-201ENST00000555180 708 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 RPP40P2-201ENST00000603596 712 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AL161729.4-201ENST00000604650 476 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC084757.4-201ENST00000616350 526 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 AC022306.3-201ENST00000619930 550 ntBASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CHMP4AQ9BY43 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 RNA5SP171-201ENST00000391071 115 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AC083875.1-201ENST00000419509 405 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 RPL23AP14-201ENST00000468281 468 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AC116353.3-201ENST00000511215 249 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AL355836.1-201ENST00000555951 870 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 MTCO3P24-201ENST00000572729 782 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 U73023.1-201ENST00000603134 700 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AC131235.4-201ENST00000609288 620 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AC090617.7-201ENST00000623952 126 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 AL392088.2-201ENST00000637607 285 ntBASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CHMP4AQ9BY43 MFSD8-236ENST00000641509 4050 ntBASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 SNORA71.3-201ENST00000362582 128 ntBASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 RNU1-18P-201ENST00000363062 164 ntBASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 AL590084.2-201ENST00000401481 382 ntBASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 BX890604.2-201ENST00000427883 474 ntBASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 BMI1P1-201ENST00000445879 941 ntBASIC4.52□□□□□ -1.69
CHMP4AQ9BY43 CYCSP35-201ENST00000451978 304 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms