Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AP002748.2-201ENST00000528671 348 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 CR383656.7-201ENST00000548164 174 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AL121603.1-201ENST00000553815 142 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 MIR5697-201ENST00000578045 78 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 MIR4738-201ENST00000579134 87 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 UBE2L4-201ENST00000587688 464 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC010928.3-201ENST00000587712 541 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AL031985.2-201ENST00000600955 480 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AL365503.1-201ENST00000605247 905 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC128687.1-201ENST00000605304 619 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC091965.4-201ENST00000607691 587 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC104010.1-201ENST00000616889 150 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AL158801.5-201ENST00000623123 465 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC093591.3-201ENST00000634516 308 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC092447.10-201ENST00000620607 1652 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NKX3-1Q99801 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
NKX3-1Q99801 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 Y_RNA.77-201ENST00000362962 107 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 Y_RNA.318-201ENST00000365131 97 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 RNA5SP235-201ENST00000365411 114 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 RPL7P60-201ENST00000397636 735 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AL138880.1-201ENST00000405824 642 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 CCNG1P1-201ENST00000406783 885 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC109583.1-201ENST00000432156 268 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 CYCSP43-201ENST00000438233 310 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 TXNP1-201ENST00000441872 371 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 NPM1P49-201ENST00000448027 714 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC104308.1-201ENST00000454621 333 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 SNRPGP9-201ENST00000456025 225 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC004801.2-202ENST00000463559 283 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC116337.2-201ENST00000477662 156 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AP000797.1-201ENST00000478870 387 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AL139099.1-201ENST00000497398 403 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 RNU6-1095P-201ENST00000516148 108 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 Y_RNA.695-201ENST00000516715 107 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 RN7SL703P-201ENST00000578485 302 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC073544.2-201ENST00000601155 540 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC112187.2-201ENST00000604345 283 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 FP236240.3-201ENST00000623061 327 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AL356585.4-201ENST00000623078 1229 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 AC034229.5-201ENST00000624258 185 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NKX3-1Q99801 PWAR6-201ENST00000552334 4618 ntBASIC3.19□□□□□ -1.9
NKX3-1Q99801 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NKX3-1Q99801 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NKX3-1Q99801 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.19□□□□□ -1.9
NKX3-1Q99801 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NKX3-1Q99801 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 GABPAP-201ENST00000419271 1356 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 MTND4P4-201ENST00000439033 1366 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 RNU6-335P-201ENST00000364563 113 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 U1.1-201ENST00000384101 164 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 MIR135A2-201ENST00000384854 100 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 RNU6ATAC-201ENST00000408749 126 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NKX3-1Q99801 RN7SKP142-201ENST00000411236 328 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 BTF3L4P1-201ENST00000413813 468 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 SSXP9-201ENST00000417503 292 ntBASIC3.18□□□□□ -1.9
NKX3-1Q99801 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.18□□□□□ -1.9
NKX3-1Q99801 MTND1P28-201ENST00000435623 950 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms