Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SPA17P1-201ENST00000416656 452 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL353729.1-201ENST00000425044 720 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL589872.1-201ENST00000426602 288 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RPL31P35-201ENST00000431058 377 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC069285.2-201ENST00000440210 275 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL121871.1-201ENST00000443413 436 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC140076.1-201ENST00000449897 361 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC009220.1-201ENST00000451614 275 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RPL7P15-201ENST00000461190 712 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RPS17P2-201ENST00000461663 408 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC010326.1-201ENST00000462726 602 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RPL7P42-201ENST00000481005 679 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RPL36AP51-201ENST00000487216 318 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC055855.1-201ENST00000489563 579 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 CEACAMP10-202ENST00000495431 496 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RNA5SP392-201ENST00000516905 112 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC105031.1-201ENST00000518550 476 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC123904.2-201ENST00000548059 300 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL356432.3-201ENST00000568952 465 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL355375.2-201ENST00000574825 175 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC121334.2-201ENST00000605387 271 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC116312.1-201ENST00000606841 314 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC015914.2-201ENST00000618167 288 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AL732618.1-201ENST00000623251 301 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 OR5J1P-201ENST00000313544 939 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 Y_RNA.481-201ENST00000384373 102 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 RNU6-738P-201ENST00000384531 106 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 MIR135A2-201ENST00000384854 100 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 OR9R1P-201ENST00000412200 877 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 EIF1P3-201ENST00000423841 334 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC133104.1-201ENST00000429100 218 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC068287.1-201ENST00000430283 295 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 OR4K11P-201ENST00000431829 904 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 RAC1P7-201ENST00000445367 377 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 MTND1P12-201ENST00000455231 147 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AP000873.1-201ENST00000463987 400 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 RPL12P20-201ENST00000475538 479 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 OR51K1P-201ENST00000510214 950 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 RNU1-6P-201ENST00000516290 144 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 RNU6-445P-201ENST00000516949 107 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 SNORA31.20-201ENST00000517111 133 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC037471.2-201ENST00000564941 598 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 CKS1BP3-201ENST00000600888 237 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AC068790.5-201ENST00000602741 355 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 MIR7641-1-201ENST00000627518 61 ntBASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CLIP3Q96DZ5 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms