Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.74□□□□□ -1.65
CHMP4CQ96CF2 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CHMP4CQ96CF2 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CHMP4CQ96CF2 TNPO1P3-201ENST00000436471 2662 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 SNORD3H-201ENST00000384486 214 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 MRPL42P2-201ENST00000403169 426 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 CCNG1P1-201ENST00000406783 885 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 BEND7P1-201ENST00000422058 457 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC233728.2-201ENST00000425348 757 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC073614.1-201ENST00000438690 650 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 RPS17P13-201ENST00000448974 407 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 SNORA84-201ENST00000459229 133 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 RN7SL542P-201ENST00000467147 294 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC093278.1-201ENST00000494700 600 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 CDC42P4-201ENST00000510507 563 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC053481.4-201ENST00000583164 216 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 SNRPGP15-201ENST00000600149 222 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 XIAPP1-201ENST00000603162 600 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC015871.2-201ENST00000603605 948 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC091805.2-201ENST00000603848 235 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 RNU6-87P-201ENST00000607561 108 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC103710.1-201ENST00000610003 901 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AL589743.7-201ENST00000612637 233 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC015540.1-201ENST00000615828 501 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC099654.13-201ENST00000639774 207 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AC018555.1-201ENST00000567548 1980 ntBASIC4.73□□□□□ -1.65
CHMP4CQ96CF2 AL365440.1-201ENST00000436135 2167 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AL359837.1-201ENST00000381357 287 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 HMGB3P23-201ENST00000414981 585 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC099677.1-201ENST00000420575 175 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 USP9YP14-201ENST00000430663 563 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 OR4K11P-201ENST00000431829 904 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 RPS24P1-201ENST00000438550 371 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 HMGB1P37-201ENST00000439613 609 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 PGBD4P3-201ENST00000440731 581 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 ATP5C1P1-201ENST00000441945 895 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 MTND6P13-201ENST00000443510 523 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AL359073.1-201ENST00000448036 403 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 UBDP1-202ENST00000457888 382 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 TPT1P7-201ENST00000458300 517 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 PPIAP15-201ENST00000479662 484 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC069499.1-201ENST00000489433 509 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 SNORA18.6-201ENST00000516792 115 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 RNU6-798P-201ENST00000516912 103 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC135001.1-201ENST00000544546 283 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC123904.2-201ENST00000548059 300 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AL356432.3-201ENST00000568952 465 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 OR4K8P-201ENST00000578842 1048 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 MIR4286-201ENST00000580651 93 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 CKS1BP3-201ENST00000600888 237 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AL158211.4-201ENST00000606988 584 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AL591424.2-201ENST00000617023 128 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC099842.1-201ENST00000619919 596 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC009268.2-201ENST00000621925 457 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 AC112204.3-201ENST00000623822 332 ntBASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.72□□□□□ -1.65
CHMP4CQ96CF2 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms