Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNA5SP492-201ENST00000411330 114 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 MTCO2P8-201ENST00000412213 658 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 TMSB4XP6-201ENST00000415187 135 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 MTCO3P12-201ENST00000416718 547 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 TMSB4XP1-201ENST00000424567 135 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 MTND2P20-201ENST00000440805 661 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 UBBP3-201ENST00000445497 241 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 MTND2P19-201ENST00000449129 1012 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 ZNF886P-201ENST00000450781 723 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC026410.2-201ENST00000460281 156 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC026412.2-201ENST00000512270 1075 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC093677.1-201ENST00000514414 678 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 SLC2A13P1-201ENST00000531560 322 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC007458.1-201ENST00000542812 373 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC125611.2-201ENST00000551907 647 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 RPL21P12-201ENST00000559810 515 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 MIR3922-201ENST00000585192 84 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC106052.1-201ENST00000608029 497 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC025588.4-201ENST00000615802 908 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AC015967.1-201ENST00000619893 476 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 UGP2-231ENST00000627474 264 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 OR4G3P-201ENST00000633500 913 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 Y_RNA.192-201ENST00000363977 102 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RNU6-1027P-201ENST00000383998 107 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AL590084.1-201ENST00000407885 387 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 MIR1289-1-201ENST00000408836 144 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RNU2-47P-201ENST00000410649 186 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RNA5SP38-201ENST00000410750 119 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 ZDHHC20P2-201ENST00000424108 429 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC092427.1-201ENST00000439177 601 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 Z96811.1-201ENST00000445880 108 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 MTCYBP11-201ENST00000447254 1109 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RPL23AP20-201ENST00000447965 421 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AL353691.1-201ENST00000451332 387 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 snoU109.4-201ENST00000458953 143 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RN7SL542P-201ENST00000467147 294 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RN7SL293P-201ENST00000481765 281 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RPL32P34-201ENST00000486380 400 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RPL21P131-201ENST00000497298 483 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 RNU6-1095P-201ENST00000516148 108 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 MTCYBP23-201ENST00000558717 1102 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC090695.1-201ENST00000561269 1222 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 MIR4637-201ENST00000582405 84 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 BNIP3P24-201ENST00000593398 557 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 DPRXP5-201ENST00000604662 539 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC009974.1-201ENST00000608881 455 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC006386.1-201ENST00000619436 415 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC095031.1-201ENST00000623685 672 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AL078595.3-201ENST00000623815 1166 ntBASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.66□□□□□ -1.98
CCDC54Q8NEL0 Z82195.2-201ENST00000612348 18351 ntBASIC2.65□□□□□ -1.98
CCDC54Q8NEL0 AL161431.1-201ENST00000618966 4205 ntBASIC2.65□□□□□ -1.98
CCDC54Q8NEL0 RNU1-109P-201ENST00000383960 147 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 RNU6-925P-201ENST00000384629 104 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 MIR449B-201ENST00000384995 97 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 SNORA11B-201ENST00000408175 129 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 RNU2-15P-201ENST00000410692 191 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 MTATP6P20-201ENST00000414147 562 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AL592310.1-201ENST00000414330 671 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AL513175.2-201ENST00000422071 443 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 NANOGP5-201ENST00000424456 877 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 DUTP6-201ENST00000425573 462 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 USP9YP11-201ENST00000427537 717 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AL590233.1-201ENST00000430017 456 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 MTND2P5-201ENST00000432656 1006 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 MTND4LP10-201ENST00000435146 291 ntBASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
CCDC54Q8NEL0 AL031313.1-201ENST00000448435 256 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms