Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL603865.2-201ENST00000401679 213 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RNU6-193P-201ENST00000410977 107 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 Z99755.1-201ENST00000414048 380 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RPL32P35-201ENST00000415214 394 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AL353678.1-201ENST00000422735 741 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 CYCSP4-201ENST00000429682 331 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC109583.1-201ENST00000432156 268 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC104978.1-201ENST00000449387 391 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC079776.3-201ENST00000450665 370 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AL109741.2-201ENST00000455561 343 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 HSPE1P6-201ENST00000479457 291 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC026801.2-201ENST00000515352 425 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP385-201ENST00000515947 110 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP217-201ENST00000515959 91 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC087808.1-201ENST00000520501 361 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 CCNG2P1-201ENST00000549521 1000 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC125611.2-201ENST00000551907 647 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC011451.2-201ENST00000604303 598 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AC007179.3-201ENST00000604976 235 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 AL049777.1-201ENST00000622740 518 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 OR5H6-203ENST00000642105 978 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 MIR208A-201ENST00000362287 71 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 RNU6-1035P-201ENST00000384477 107 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 MIR483-201ENST00000385070 76 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 FO393413.1-201ENST00000402892 195 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 SPA17P1-201ENST00000416656 452 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL354692.1-201ENST00000423044 315 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC013262.1-201ENST00000426710 252 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC073063.1-201ENST00000434352 607 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 GTF2IP7-202ENST00000436677 309 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 MTND2P20-201ENST00000440805 661 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC112492.1-201ENST00000449607 712 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL590639.1-201ENST00000456484 337 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 RNU1-143P-201ENST00000516296 146 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC103843.2-201ENST00000530523 682 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC126365.2-201ENST00000580630 379 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL035413.2-201ENST00000604801 525 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL391834.2-201ENST00000609982 546 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 U1.23-201ENST00000610293 146 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC104763.3-201ENST00000613765 618 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC004696.1-201ENST00000614345 607 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 RNU1-68P-201ENST00000615382 146 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC084824.4-201ENST00000620106 731 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 U1.39-201ENST00000621562 146 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AL159972.1-201ENST00000625150 448 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 AC119674.1-207ENST00000641355 633 ntBASIC3.09□□□□□ -1.91
ZNF540Q8NDQ6 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.09□□□□□ -1.92
ZNF540Q8NDQ6 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-525P-201ENST00000363685 104 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms