Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC011611.1-201ENST00000552179 197 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 MIR4742-201ENST00000581069 85 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 MIR4719-201ENST00000585233 84 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 BNIP3P25-201ENST00000596023 559 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AP000769.2-201ENST00000602344 396 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AC098826.3-201ENST00000603823 466 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AC106900.2-201ENST00000604994 317 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AC087045.1-201ENST00000605856 382 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AC090132.2-201ENST00000615881 347 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AC103705.1-201ENST00000619013 241 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 MIR7154-201ENST00000620673 73 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 AL122023.1-201ENST00000622847 530 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.14□□□□□ -1.75
CLRN3Q8NCR9 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 DHX9P1-201ENST00000436565 3076 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC023421.1-201ENST00000590535 1785 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 RHOT1P2-201ENST00000366423 333 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 MIR301A-201ENST00000385261 86 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 RPS3AP2-201ENST00000407190 754 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 RNA5SP129-201ENST00000410276 118 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AL591848.1-201ENST00000413092 322 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 CRYBB2P1-203ENST00000415709 538 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC007161.1-204ENST00000423039 460 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 CYCSP6-201ENST00000434498 302 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 RPL12P49-201ENST00000441100 121 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC011753.3-201ENST00000443436 406 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 PRPS1P1-201ENST00000445305 876 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 RNU7-167P-201ENST00000459160 62 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 RN7SL583P-201ENST00000475692 287 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 RPL31P60-201ENST00000478450 367 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 MTCO3P23-201ENST00000561363 289 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 CYCSP40-201ENST00000575927 294 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 MIR5692A1-201ENST00000580523 69 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AL161798.1-201ENST00000604630 131 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC021646.1-201ENST00000605469 484 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC020634.1-201ENST00000608701 549 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC109583.2-201ENST00000617367 129 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC244100.4-201ENST00000617747 388 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AP005431.1-201ENST00000618479 319 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AC005858.4-201ENST00000623191 700 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AL512643.1-201ENST00000635735 524 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 TPTEP1-208ENST00000636884 213 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 HSPA8P4-201ENST00000511877 1920 ntBASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CLRN3Q8NCR9 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 Y_RNA.529-201ENST00000384586 119 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RNA5SP219-201ENST00000390940 113 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AL139397.2-201ENST00000404529 772 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 PPIAP31-201ENST00000405422 495 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 RNU2-33P-201ENST00000410344 192 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 SDHDP6-201ENST00000414693 480 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 BX682237.1-201ENST00000415016 335 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AC007390.1-201ENST00000415722 356 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AL353678.1-201ENST00000422735 741 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 AL592045.1-201ENST00000429867 352 ntBASIC4.12□□□□□ -1.75
CLRN3Q8NCR9 NDUFA5P4-201ENST00000436704 385 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms