Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 Y_RNA.5-201ENST00000362334 102 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 RNU6-1318P-201ENST00000365389 103 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 Y_RNA.452-201ENST00000384202 108 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 MIR1182-201ENST00000408363 97 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 MIR1178-201ENST00000408396 91 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 Y_RNA.646-201ENST00000410980 101 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 EI24P4-201ENST00000423683 1078 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC104058.1-201ENST00000448028 297 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC116533.1-201ENST00000459748 321 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 RPL21P8-201ENST00000465083 535 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 SNRPCP2-201ENST00000504370 475 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 TBCAP3-201ENST00000512475 312 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 RNU6-189P-201ENST00000516120 101 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 HMGB1P19-201ENST00000517578 577 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC009902.1-201ENST00000519351 183 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AL008729.2-201ENST00000606393 473 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AC091979.2-201ENST00000607514 214 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AL355365.1-201ENST00000616480 294 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 AL669831.3-213ENST00000636676 183 ntBASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF111Q6ZNA4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC090337.1-201ENST00000579651 2074 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RPL23P2-201ENST00000320371 421 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RNU11-4P-201ENST00000391149 133 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AP000580.1-201ENST00000404439 358 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RNU6-985P-201ENST00000410182 104 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RNU4-34P-201ENST00000410431 124 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RNU2-47P-201ENST00000410649 186 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RPL23AP38-201ENST00000423801 469 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 CEACAMP1-201ENST00000434624 1035 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 DHFRP3-201ENST00000455595 559 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC005008.1-201ENST00000456151 612 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 SNORD97-201ENST00000459187 142 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RN7SL799P-201ENST00000475891 298 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 RBBP4P6-201ENST00000508098 202 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 HIGD1AP13-201ENST00000509878 289 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 MTCO2P24-201ENST00000515611 426 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 DEFB108D-201ENST00000527787 222 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC007566.2-201ENST00000603642 413 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC010680.4-201ENST00000605334 543 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 SDR42E1P1-201ENST00000611327 477 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC103705.1-201ENST00000619013 241 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AL031119.1-201ENST00000404707 1879 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AC008758.3-201ENST00000507003 1829 ntBASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
RNF111Q6ZNA4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 ZNF519P1-201ENST00000449011 1626 ntBASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 RNU6-1115P-201ENST00000362490 106 ntBASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 Y_RNA.158-201ENST00000363651 101 ntBASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 RNU6-960P-201ENST00000364056 120 ntBASIC4.8□□□□□ -1.64
RNF111Q6ZNA4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms