Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC233263.6-201ENST00000631132 1963 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL158163.1-201ENST00000603915 1649 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 U3.4-201ENST00000363352 213 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 RNU1-89P-201ENST00000384592 164 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 RNU6-712P-201ENST00000410558 100 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 RN7SKP284-201ENST00000411002 343 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AIMP1P1-201ENST00000418670 937 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC091286.1-201ENST00000431233 461 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 BTF3P10-201ENST00000433415 495 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 MTND4LP10-201ENST00000435146 291 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 RPL23AP46-201ENST00000438548 490 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 NOTCH2P1-201ENST00000443481 624 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL353691.1-201ENST00000451332 387 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL445669.2-201ENST00000454425 421 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC004062.1-201ENST00000509926 645 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC008958.1-201ENST00000511047 682 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 RNU6-714P-201ENST00000516963 103 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 NARSP2-201ENST00000518524 679 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL121603.1-201ENST00000553815 142 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 GNRHR2P1-201ENST00000555315 631 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AP005205.1-201ENST00000563503 508 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC022968.1-201ENST00000567372 442 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 OR4K8P-201ENST00000578842 1048 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 MIR4474-201ENST00000579189 78 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 MIR5047-201ENST00000579212 100 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AC006254.3-201ENST00000603353 884 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 AL592436.1-201ENST00000605135 558 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PDLIM3Q53GG5 IPO8P1-201ENST00000455509 3109 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AL049780.3-201ENST00000624612 1583 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AP002001.2-201ENST00000529025 1469 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RNA5SP322-201ENST00000363617 119 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 SNORD116-9-201ENST00000384000 95 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 SNORD116-3-201ENST00000384287 95 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 SNORD116-7-201ENST00000384404 95 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 SNORD116-5-201ENST00000384462 95 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RN7SKP33-201ENST00000410942 340 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 SEPT2P1-201ENST00000419651 180 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RPS27AP14-201ENST00000422868 454 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RPL7P36-201ENST00000444633 681 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 GDI2P2-201ENST00000445131 608 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 PRDX3P3-201ENST00000447765 522 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC009961.3-201ENST00000449832 765 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 SSXP4-201ENST00000451349 245 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 SNRPGP9-201ENST00000456025 225 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 MTCO1P42-201ENST00000457379 726 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 snoU13.4-201ENST00000458916 104 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RN7SL330P-201ENST00000469709 307 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC012181.1-201ENST00000479895 423 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AL049873.1-201ENST00000480540 376 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC105313.1-201ENST00000509121 353 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC010342.1-201ENST00000514047 877 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 MIR2114-201ENST00000516645 80 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RNU7-143P-201ENST00000516781 65 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 RPL12P22-201ENST00000519073 490 ntBASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.3□□□□□ -1.88
PDLIM3Q53GG5 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms