Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AL390023.1-201ENST00000428836 262 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC004866.2-201ENST00000438285 481 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC023424.2-201ENST00000493479 777 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 SLC25A15P5-201ENST00000508033 253 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 RN7SKP43-201ENST00000516173 320 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 HSPA8P13-201ENST00000523715 472 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 CR383656.7-201ENST00000548164 174 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC034268.2-201ENST00000571784 482 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC069431.2-201ENST00000604149 1099 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC106791.2-201ENST00000604680 391 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AL138478.1-201ENST00000612252 832 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC243773.3-201ENST00000613270 256 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC084757.4-201ENST00000616350 526 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 MIR6076-201ENST00000617521 113 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 MIR6075-201ENST00000620782 95 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AC090740.1-201ENST00000623193 2262 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 RNU6-173P-201ENST00000364215 104 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 RNVU1-14-201ENST00000384770 164 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 RNU6-882P-201ENST00000391025 103 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 FAT1P1-201ENST00000406588 507 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 YWHAZP7-201ENST00000436906 631 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 MTCO1P53-201ENST00000441633 699 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AL358794.1-201ENST00000445689 381 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AL353691.1-201ENST00000451332 387 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 MTATP6P14-201ENST00000455189 673 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 MTCYBP17-201ENST00000503579 789 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC111000.2-201ENST00000507775 550 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC113420.1-201ENST00000507903 571 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AP005205.1-201ENST00000563503 508 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AL132657.2-201ENST00000564417 358 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AL031176.1-201ENST00000604554 466 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AL158050.2-201ENST00000605336 568 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC012443.1-201ENST00000605605 231 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC080013.4-201ENST00000607624 649 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AL121895.2-201ENST00000619558 447 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC026422.1-201ENST00000623961 452 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 MIR622-201ENST00000638396 96 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 AC097714.1-201ENST00000511272 1647 ntBASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC40Q4G0X9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC073325.2-201ENST00000339545 159 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 SNORD116-12-201ENST00000384468 92 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 MIR135A2-201ENST00000384854 100 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AL031121.1-201ENST00000406553 254 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 RPL7P49-201ENST00000471402 708 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 RPL30P14-201ENST00000482744 348 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC074250.1-201ENST00000511117 192 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 RN7SKP272-201ENST00000516988 232 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 SNORA31.26-201ENST00000517250 137 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC005832.3-201ENST00000537929 631 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC091046.2-201ENST00000620775 665 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 AC022509.4-201ENST00000621404 572 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 LINC02211-204ENST00000642024 1070 ntBASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC40Q4G0X9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms