Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA4Q00056 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA4Q00056 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXA4Q00056 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA4Q00056 MTND4P35-201ENST00000604257 1375 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA4Q00056 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA4Q00056 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
HOXA4Q00056 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 Y_RNA.166-201ENST00000363730 102 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 RNU1-63P-201ENST00000383902 164 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 RNU6-641P-201ENST00000384006 107 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXA4Q00056 RNU6-821P-201ENST00000390995 107 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 SNORA68.2-201ENST00000391263 128 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 RNU2-39P-201ENST00000410604 198 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 RN7SKP216-201ENST00000411050 312 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 EEF1A1P40-201ENST00000412883 573 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AL732292.1-201ENST00000426692 226 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC016696.1-201ENST00000446949 318 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC010655.1-201ENST00000449336 292 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC007967.1-201ENST00000455422 1159 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 MRPS17P3-201ENST00000465453 385 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 RN7SL346P-201ENST00000491561 294 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC116562.3-201ENST00000506136 177 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC092436.1-201ENST00000506450 503 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 RNU7-51P-201ENST00000516560 62 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 CDH12P4-201ENST00000517835 295 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 CDH12P3-201ENST00000517935 295 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 CDH12P1-201ENST00000518435 295 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXA4Q00056 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC068587.5-201ENST00000528506 175 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AP005435.4-201ENST00000529514 284 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 OR5AL2P-201ENST00000532185 920 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 HPRT1P3-201ENST00000539521 576 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC069061.3-201ENST00000582254 823 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 MIR4293-201ENST00000584305 78 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AL669831.4-202ENST00000590817 238 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC234771.5-201ENST00000600161 514 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC079684.1-201ENST00000621405 437 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
HOXA4Q00056 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXA4Q00056 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA4Q00056 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
HOXA4Q00056 BCLAF1P2-201ENST00000624956 2609 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
HOXA4Q00056 AC027287.1-201ENST00000553115 1453 ntBASIC3.79□□□□□ -1.8
HOXA4Q00056 MAPK10-303ENST00000641324 3959 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXA4Q00056 CPHL1P-201ENST00000461341 3407 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
HOXA4Q00056 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC108751.5-201ENST00000492880 1336 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
HOXA4Q00056 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXA4Q00056 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
HOXA4Q00056 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC067945.1-201ENST00000342609 618 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 Y_RNA.58-201ENST00000362807 102 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 Y_RNA.154-201ENST00000363624 102 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RNY3P1-201ENST00000365085 102 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RNY3-201ENST00000365484 102 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RNU4-20P-201ENST00000365601 151 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 RNU6-432P-201ENST00000384196 109 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 Y_RNA.490-201ENST00000384413 102 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 SNORD37.1-201ENST00000390968 65 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RNU6-903P-201ENST00000391270 109 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 Z98745.1-201ENST00000402553 494 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RNA5SP296-201ENST00000410523 111 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RN7SKP159-201ENST00000410657 292 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 Y_RNA.625-201ENST00000411256 107 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA4Q00056 TMSB10P2-201ENST00000416049 131 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms