Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.29□□□□□ -1.88
HMGCS2P54868 AC090695.1-201ENST00000561269 1222 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 AC009097.3-201ENST00000563557 1018 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HMGCS2P54868 MIR4435-1-201ENST00000582552 80 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 AC022069.1-201ENST00000582910 658 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 SNORD39.3-201ENST00000584451 71 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.29□□□□□ -1.88
HMGCS2P54868 GAS5-AS1-201ENST00000602767 694 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 AC021749.1-201ENST00000604322 607 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 HSPE1P14-201ENST00000605812 302 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 AC231759.1-201ENST00000616455 597 ntBASIC3.29□□□□□ -1.88
HMGCS2P54868 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HMGCS2P54868 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HMGCS2P54868 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC117529.2-201ENST00000512159 2068 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.28□□□□□ -1.88
HMGCS2P54868 RNU6-1066P-201ENST00000363573 105 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 Y_RNA.192-201ENST00000363977 102 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 RNU6-441P-201ENST00000384545 106 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 MTND4P13-201ENST00000402078 1023 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AL590084.1-201ENST00000407885 387 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AL159169.1-201ENST00000421119 127 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 GTF2IP23-201ENST00000423746 351 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AL035407.1-201ENST00000429211 571 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 COX7BP2-201ENST00000437976 242 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 HMGB1P12-201ENST00000438594 598 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AC092393.1-201ENST00000439625 742 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 MTCYBP35-201ENST00000503630 1137 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 SNORA48.10-201ENST00000516965 160 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 FAM60DP-201ENST00000524174 632 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC093519.1-201ENST00000566109 298 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC022022.2-201ENST00000602989 360 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC113368.1-201ENST00000603736 382 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AC007349.4-201ENST00000608114 532 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AC087683.2-201ENST00000611384 326 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AL592295.2-201ENST00000612578 206 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AC009159.2-201ENST00000617603 606 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HMGCS2P54868 AC068620.4-201ENST00000636730 1182 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 AC010149.2-201ENST00000637608 315 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HMGCS2P54868 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.28□□□□□ -1.88
HMGCS2P54868 ZNF876P-202ENST00000398732 1485 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 Z99496.1-201ENST00000469424 1477 ntBASIC3.28□□□□□ -1.88
HMGCS2P54868 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
HMGCS2P54868 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.27□□□□□ -1.89
HMGCS2P54868 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
HMGCS2P54868 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HMGCS2P54868 RNU6-859P-201ENST00000362728 107 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 RNU6-560P-201ENST00000364007 108 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 U3.12-201ENST00000364498 214 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HMGCS2P54868 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HMGCS2P54868 RNU6-921P-201ENST00000384361 107 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 RNU6-83P-201ENST00000384568 112 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AL121978.1-201ENST00000402778 359 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AL138880.1-201ENST00000405824 642 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 RN7SKP285-201ENST00000410137 318 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 HIGD1AP15-201ENST00000416198 280 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 RPS24P7-201ENST00000416921 246 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.27□□□□□ -1.89
HMGCS2P54868 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HMGCS2P54868 MTCO2P20-201ENST00000437339 673 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 FGF7P5-201ENST00000441829 291 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.27□□□□□ -1.89
HMGCS2P54868 AP000936.2-201ENST00000447151 681 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 NDUFA5P7-201ENST00000452914 242 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 PNPLA4P1-201ENST00000458328 305 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AL139824.2-201ENST00000458731 1095 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AC004801.2-202ENST00000463559 283 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 SYPL1P1-201ENST00000473622 768 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.27□□□□□ -1.89
HMGCS2P54868 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.27□□□□□ -1.89
HMGCS2P54868 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HMGCS2P54868 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HMGCS2P54868 LRRC34P1-201ENST00000542742 915 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.27□□□□□ -1.89
HMGCS2P54868 AC022662.1-201ENST00000580252 331 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.27□□□□□ -1.89
HMGCS2P54868 AC061975.8-201ENST00000587058 721 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.27□□□□□ -1.89
HMGCS2P54868 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.27□□□□□ -1.89
HMGCS2P54868 BNIP3P26-201ENST00000600827 554 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.27□□□□□ -1.89
HMGCS2P54868 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.27□□□□□ -1.89
HMGCS2P54868 AL512506.2-201ENST00000624472 458 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 AC009039.2-201ENST00000624524 529 ntBASIC3.27□□□□□ -1.89
HMGCS2P54868 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms