Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.4□□□□□ -1.71
MSX2P35548 ELL2P4-201ENST00000446870 1376 ntBASIC4.4□□□□□ -1.71
MSX2P35548 LARP1BP1-201ENST00000506036 1359 ntBASIC4.4□□□□□ -1.71
MSX2P35548 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 DHX40P1-201ENST00000588725 1412 ntBASIC4.39□□□□□ -1.71
MSX2P35548 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.39□□□□□ -1.71
MSX2P35548 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 AC073343.1-201ENST00000328239 651 ntBASIC4.39□□□□□ -1.71
MSX2P35548 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 MIR369-201ENST00000362155 70 ntBASIC4.39□□□□□ -1.71
MSX2P35548 Y_RNA.100-201ENST00000363141 102 ntBASIC4.39□□□□□ -1.71
MSX2P35548 RNU6-97P-201ENST00000363387 104 ntBASIC4.39□□□□□ -1.71
MSX2P35548 RNU5E-8P-201ENST00000363502 116 ntBASIC4.39□□□□□ -1.71
MSX2P35548 RNU6-522P-201ENST00000364497 107 ntBASIC4.39□□□□□ -1.71
MSX2P35548 RNY3P13-201ENST00000365542 102 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.39□□□□□ -1.71
MSX2P35548 SNORD116-29-201ENST00000384516 83 ntBASIC4.39□□□□□ -1.71
MSX2P35548 ENSAP1-201ENST00000392855 326 ntBASIC4.39□□□□□ -1.71
MSX2P35548 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 GLULP6-201ENST00000399502 913 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AL583835.1-201ENST00000399570 407 ntBASIC4.39□□□□□ -1.71
MSX2P35548 MIR1286-201ENST00000408112 78 ntBASIC4.39□□□□□ -1.71
MSX2P35548 PSMA6P3-201ENST00000428242 164 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.39□□□□□ -1.71
MSX2P35548 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX2P35548 FTH1P1-201ENST00000437933 532 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.39□□□□□ -1.71
MSX2P35548 AC104308.1-201ENST00000454621 333 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AL590639.1-201ENST00000456484 337 ntBASIC4.39□□□□□ -1.71
MSX2P35548 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
MSX2P35548 snoU13.8-201ENST00000458890 104 ntBASIC4.39□□□□□ -1.71
MSX2P35548 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX2P35548 AC130509.1-201ENST00000464158 433 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX2P35548 AC021382.1-201ENST00000483523 359 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC093270.2-201ENST00000486157 792 ntBASIC4.39□□□□□ -1.71
MSX2P35548 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 AC020893.1-201ENST00000502452 580 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC024558.1-201ENST00000505008 528 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC016065.2-201ENST00000514530 444 ntBASIC4.39□□□□□ -1.71
MSX2P35548 RN7SKP219-201ENST00000516825 296 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX2P35548 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.39□□□□□ -1.71
MSX2P35548 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX2P35548 AP005435.4-201ENST00000529514 284 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC103843.2-201ENST00000530523 682 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX2P35548 FRG2DP-202ENST00000566967 323 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 AC090615.1-201ENST00000577519 154 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.39□□□□□ -1.71
MSX2P35548 AC091178.1-203ENST00000584586 279 ntBASIC4.39□□□□□ -1.71
MSX2P35548 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 AC103710.2-201ENST00000609912 942 ntBASIC4.39□□□□□ -1.71
MSX2P35548 AC126915.2-201ENST00000610957 190 ntBASIC4.39□□□□□ -1.71
MSX2P35548 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
MSX2P35548 AL122126.1-201ENST00000546905 1318 ntBASIC4.39□□□□□ -1.71
MSX2P35548 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSX2P35548 AL391684.1-202ENST00000641293 1636 ntBASIC4.39□□□□□ -1.71
MSX2P35548 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSX2P35548 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
MSX2P35548 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.38□□□□□ -1.71
MSX2P35548 ZNF33CP-201ENST00000432492 2030 ntBASIC4.38□□□□□ -1.71
MSX2P35548 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSX2P35548 AL592148.3-201ENST00000608771 2646 ntBASIC4.38□□□□□ -1.71
MSX2P35548 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MSX2P35548 RNU1-108P-201ENST00000362556 161 ntBASIC4.38□□□□□ -1.71
MSX2P35548 Y_RNA.422-201ENST00000384054 114 ntBASIC4.38□□□□□ -1.71
MSX2P35548 RNU6-38P-201ENST00000384085 107 ntBASIC4.38□□□□□ -1.71
MSX2P35548 MIR454-201ENST00000390180 115 ntBASIC4.38□□□□□ -1.71
MSX2P35548 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
MSX2P35548 SNORD37.1-201ENST00000390968 65 ntBASIC4.38□□□□□ -1.71
MSX2P35548 U3.30-201ENST00000391308 210 ntBASIC4.38□□□□□ -1.71
MSX2P35548 RPL5P18-201ENST00000406671 891 ntBASIC4.38□□□□□ -1.71
MSX2P35548 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX2P35548 RNU4-26P-201ENST00000410270 107 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.38□□□□□ -1.71
MSX2P35548 GJA6P-201ENST00000415117 1042 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX2P35548 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX2P35548 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.38□□□□□ -1.71
MSX2P35548 EIF4EP1-201ENST00000422311 642 ntBASIC4.38□□□□□ -1.71
MSX2P35548 COX6CP15-201ENST00000426313 211 ntBASIC4.38□□□□□ -1.71
MSX2P35548 MTND3P2-201ENST00000438452 342 ntBASIC4.38□□□□□ -1.71
MSX2P35548 RPL7P52-201ENST00000449200 742 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AC010733.1-201ENST00000451515 401 ntBASIC4.38□□□□□ -1.71
MSX2P35548 BX276092.4-201ENST00000452056 248 ntBASIC4.38□□□□□ -1.71
MSX2P35548 AL389915.2-201ENST00000454576 441 ntBASIC4.38□□□□□ -1.71
MSX2P35548 RNU6-333P-201ENST00000459117 107 ntBASIC4.38□□□□□ -1.71
MSX2P35548 Y_RNA.631-201ENST00000459607 101 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms