Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC1.89□□□□□ -2.11
COL6A3P12111 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
COL6A3P12111 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
COL6A3P12111 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
COL6A3P12111 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
COL6A3P12111 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC1.88□□□□□ -2.11
COL6A3P12111 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.88□□□□□ -2.11
COL6A3P12111 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC1.88□□□□□ -2.11
COL6A3P12111 AC008687.2-201ENST00000597865 520 ntBASIC1.88□□□□□ -2.11
COL6A3P12111 AC103988.1-201ENST00000566382 2177 ntBASIC1.88□□□□□ -2.11
COL6A3P12111 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC1.88□□□□□ -2.11
COL6A3P12111 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
COL6A3P12111 AC012078.1-201ENST00000405035 1646 ntBASIC1.88□□□□□ -2.11
COL6A3P12111 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
COL6A3P12111 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
COL6A3P12111 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
COL6A3P12111 U8.8-201ENST00000365399 135 ntBASIC1.88□□□□□ -2.11
COL6A3P12111 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC1.88□□□□□ -2.11
COL6A3P12111 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.88□□□□□ -2.11
COL6A3P12111 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC1.88□□□□□ -2.11
COL6A3P12111 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.88□□□□□ -2.11
COL6A3P12111 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC1.88□□□□□ -2.11
COL6A3P12111 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.88□□□□□ -2.11
COL6A3P12111 AC007536.1-201ENST00000533382 349 ntBASIC1.88□□□□□ -2.11
COL6A3P12111 AC005336.3-201ENST00000623833 2679 ntBASIC1.87□□□□□ -2.11
COL6A3P12111 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL6A3P12111 ARL4AP2-201ENST00000507378 601 ntBASIC1.87□□□□□ -2.11
COL6A3P12111 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
COL6A3P12111 AL160237.3-201ENST00000604114 1013 ntBASIC1.87□□□□□ -2.11
COL6A3P12111 AL139286.1-201ENST00000604465 483 ntBASIC1.87□□□□□ -2.11
COL6A3P12111 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL6A3P12111 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.87□□□□□ -2.11
COL6A3P12111 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.87□□□□□ -2.11
COL6A3P12111 AC025016.1-201ENST00000616746 682 ntBASIC1.87□□□□□ -2.11
COL6A3P12111 AL450326.2-201ENST00000421913 1962 ntBASIC1.87□□□□□ -2.11
COL6A3P12111 NUP58P1-201ENST00000502546 1738 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 RNA5SP62-201ENST00000363457 110 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 RNU4-51P-201ENST00000364206 140 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 MIR520E-201ENST00000384867 87 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.86□□□□□ -2.11
COL6A3P12111 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC1.86□□□□□ -2.11
COL6A3P12111 AC012119.1-201ENST00000603184 222 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC1.86□□□□□ -2.11
COL6A3P12111 AC011472.4-201ENST00000615848 491 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.86□□□□□ -2.11
COL6A3P12111 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
COL6A3P12111 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL6A3P12111 ZNF355P-201ENST00000427301 3216 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
COL6A3P12111 RNU1-22P-201ENST00000363334 158 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 RNU1-51P-201ENST00000365345 176 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL6A3P12111 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC1.86□□□□□ -2.11
COL6A3P12111 AC114801.2-201ENST00000503825 781 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 AC087468.1-201ENST00000604365 630 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
COL6A3P12111 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
COL6A3P12111 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
COL6A3P12111 Y_RNA.390-201ENST00000383932 102 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 VN1R108P-201ENST00000431580 830 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL6A3P12111 AC244505.4-201ENST00000434905 287 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 SSXP5-201ENST00000443473 287 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 HMGB1P26-201ENST00000452520 628 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 AL583843.1-201ENST00000456070 346 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 RN7SL274P-201ENST00000492268 272 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC1.86□□□□□ -2.11
COL6A3P12111 SULT1C2P1-202ENST00000562418 459 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 AC096772.1-201ENST00000609146 564 ntBASIC1.86□□□□□ -2.11
COL6A3P12111 DDX43P2-201ENST00000604753 1354 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 AC066616.2-201ENST00000559334 1481 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.85□□□□□ -2.11
COL6A3P12111 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.85□□□□□ -2.11
COL6A3P12111 SNORA51.4-201ENST00000364993 124 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.85□□□□□ -2.11
COL6A3P12111 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC1.85□□□□□ -2.11
COL6A3P12111 AC024560.3-201ENST00000608482 349 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 AC002076.2-201ENST00000617362 122 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
COL6A3P12111 MTND4P23-201ENST00000447723 1363 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
COL6A3P12111 SNORD21-201ENST00000383953 95 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 RNU1-138P-201ENST00000384093 164 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 MIR142-201ENST00000384835 87 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 RPL23AP20-201ENST00000447965 421 ntBASIC1.85□□□□□ -2.11
COL6A3P12111 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.85□□□□□ -2.11
COL6A3P12111 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC1.84□□□□□ -2.11
COL6A3P12111 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC1.84□□□□□ -2.11
COL6A3P12111 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC1.84□□□□□ -2.11
COL6A3P12111 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC1.84□□□□□ -2.11
COL6A3P12111 SUMO2P6-201ENST00000505273 288 ntBASIC1.84□□□□□ -2.11
COL6A3P12111 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
COL6A3P12111 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.84□□□□□ -2.11
COL6A3P12111 AP000889.2-201ENST00000532684 490 ntBASIC1.84□□□□□ -2.11
COL6A3P12111 AC023825.1-201ENST00000566704 1030 ntBASIC1.84□□□□□ -2.11
COL6A3P12111 AC109446.2-201ENST00000567872 497 ntBASIC1.84□□□□□ -2.11
COL6A3P12111 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.84□□□□□ -2.11
COL6A3P12111 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
COL6A3P12111 Y_RNA.115-201ENST00000363272 98 ntBASIC1.84□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms