Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RPS29P7-201ENST00000439662 171 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.92□□□□□ -1.62
COL6A1P12109 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.92□□□□□ -1.62
COL6A1P12109 PABPC1P3-201ENST00000469174 459 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AP001025.2-201ENST00000490908 477 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.92□□□□□ -1.62
COL6A1P12109 AC026726.1-201ENST00000512859 601 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AC005798.1-201ENST00000513715 387 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.92□□□□□ -1.62
COL6A1P12109 RNA5SP49-201ENST00000516450 115 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AC104986.1-201ENST00000517978 436 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A1P12109 AC022690.1-201ENST00000526681 550 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.92□□□□□ -1.62
COL6A1P12109 AL161756.2-201ENST00000604597 246 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AC121334.2-201ENST00000605387 271 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AC069200.1-201ENST00000609511 323 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 Y_RNA.812-201ENST00000610788 101 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 RMST_3.1-201ENST00000611651 109 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 Y_RNA.784-201ENST00000613803 101 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 Y_RNA.787-201ENST00000616522 101 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 Y_RNA.780-201ENST00000617336 101 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 Y_RNA.801-201ENST00000619005 101 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 AL713922.2-201ENST00000619384 716 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
COL6A1P12109 AC244100.1-202ENST00000621554 382 ntBASIC4.92□□□□□ -1.62
COL6A1P12109 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL6A1P12109 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.92□□□□□ -1.62
COL6A1P12109 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.92□□□□□ -1.62
COL6A1P12109 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL6A1P12109 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A1P12109 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.91□□□□□ -1.62
COL6A1P12109 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.91□□□□□ -1.62
COL6A1P12109 AC100778.3-201ENST00000580060 1750 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.91□□□□□ -1.62
COL6A1P12109 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
COL6A1P12109 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A1P12109 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL6A1P12109 RNU4-79P-201ENST00000362764 141 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A1P12109 RNU6-730P-201ENST00000383954 104 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 MT-TC-201ENST00000387405 66 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AL031679.1-201ENST00000400616 525 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 DHFRP6-201ENST00000401776 268 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.91□□□□□ -1.62
COL6A1P12109 AL365400.1-201ENST00000431854 640 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 USP9YP15-201ENST00000442391 422 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 FAM103A2P-201ENST00000444122 354 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AC002381.1-201ENST00000447049 280 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 RNU6-261P-201ENST00000459506 102 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AC139783.2-201ENST00000504847 1145 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.91□□□□□ -1.62
COL6A1P12109 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 AC243972.3-201ENST00000539655 198 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.91□□□□□ -1.62
COL6A1P12109 AC034105.3-201ENST00000565294 442 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AC055876.1-202ENST00000567053 138 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.91□□□□□ -1.62
COL6A1P12109 COX6CP4-201ENST00000605798 228 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AL050343.2-201ENST00000607338 280 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 OR10AB1P-201ENST00000609613 938 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 BX664608.1-201ENST00000610519 487 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 DISC2.1-201ENST00000612827 205 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AL160413.1-201ENST00000622780 310 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 AC138649.5-201ENST00000637456 137 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A1P12109 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.91□□□□□ -1.62
COL6A1P12109 AL731532.2-201ENST00000623542 1953 ntBASIC4.91□□□□□ -1.62
COL6A1P12109 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
COL6A1P12109 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL6A1P12109 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL6A1P12109 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.9□□□□□ -1.62
COL6A1P12109 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL6A1P12109 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.9□□□□□ -1.62
COL6A1P12109 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
COL6A1P12109 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.9□□□□□ -1.62
COL6A1P12109 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.9□□□□□ -1.62
COL6A1P12109 XIAPP3-201ENST00000312918 795 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A1P12109 SNORD81.2-201ENST00000365153 76 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 RNU6-1226P-201ENST00000384317 107 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 MIR200C-201ENST00000384980 68 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 RPS4XP8-201ENST00000402039 771 ntBASIC4.9□□□□□ -1.63
COL6A1P12109 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.9□□□□□ -1.63
COL6A1P12109 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL6A1P12109 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.9□□□□□ -1.63
COL6A1P12109 TAAR7P-201ENST00000436141 242 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms