Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU2-36P-201ENST00000410361 191 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 RNU2-50P-201ENST00000410494 143 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 HMGN2P27-201ENST00000427352 270 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AL731563.1-201ENST00000442202 214 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 IGKV1OR-3-201ENST00000446944 348 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC022431.1-201ENST00000450941 438 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC006967.1-201ENST00000467608 589 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 RPS27P27-201ENST00000498779 255 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC090136.1-201ENST00000520009 240 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC133555.2-201ENST00000550213 292 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AL442067.1-201ENST00000613261 223 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 SLC2A3P1-201ENST00000519666 1451 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AL592148.3-201ENST00000608771 2646 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 Y_RNA.5-201ENST00000362334 102 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 RNA5SP505-201ENST00000364748 108 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 U3.30-201ENST00000391308 210 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 RN7SKP100-201ENST00000411258 284 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 COX5BP7-201ENST00000414780 274 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 TRAPPC2P5-201ENST00000426293 308 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 CBX3P6-201ENST00000430257 527 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 USP9YP16-201ENST00000430287 407 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AC073264.2-201ENST00000448886 166 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 USP9YP23-201ENST00000455085 407 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 BTF3P15-201ENST00000455606 336 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 snoU13.7-201ENST00000459220 104 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AC004801.2-202ENST00000463559 283 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 RN7SL354P-201ENST00000469282 294 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AC006463.2-201ENST00000473326 348 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 HMGB1P30-201ENST00000492455 606 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AL139099.1-201ENST00000497398 403 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 RNU6-256P-201ENST00000516747 97 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AL390726.5-202ENST00000564800 256 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AC006272.2-201ENST00000594725 163 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AC104687.2-201ENST00000604442 342 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 AC008758.3-201ENST00000507003 1829 ntBASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CHMP3Q9Y3E7 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 SNORD113-7-201ENST00000363762 77 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 MIR192-201ENST00000384915 110 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AC114491.1-201ENST00000416095 246 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AL590139.1-201ENST00000416267 400 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 MTCYBP10-201ENST00000424905 650 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AL031736.2-201ENST00000426573 787 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 NRBF2P3-201ENST00000432731 865 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 TXNP1-201ENST00000441872 371 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AC104058.1-201ENST00000448028 297 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 TRBV1-201ENST00000476502 284 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AC017037.2-201ENST00000513850 890 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 RNU6-798P-201ENST00000516912 103 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 HIGD1AP5-201ENST00000529959 259 ntBASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.05□□□□□ -1.44
CHMP3Q9Y3E7 AC092747.3-201ENST00000603769 301 ntBASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms