Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC093281.2-201ENST00000510153 597 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 MIR2276-201ENST00000516886 89 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC107934.2-201ENST00000518653 310 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC022861.1-201ENST00000522981 663 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 MIR4474-201ENST00000579189 78 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC012468.1-201ENST00000604888 430 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC055876.5-201ENST00000605667 259 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC008121.2-201ENST00000614647 523 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AL136981.2-201ENST00000617319 734 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AL356321.1-201ENST00000621360 228 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC007490.1-201ENST00000624321 703 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC017037.3-201ENST00000625016 472 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 Z83843.1-201ENST00000604070 3685 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC017071.1-201ENST00000564407 2204 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 HMGN1P24-201ENST00000412282 298 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC019178.2-201ENST00000423595 505 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 ZYG11AP1-201ENST00000430329 837 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 HMGN2P20-201ENST00000437531 273 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 HSPE1P28-201ENST00000443139 211 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 RPL31P50-201ENST00000471002 296 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 RN7SL601P-201ENST00000471221 293 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 RPS27AP1-201ENST00000475545 471 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC021678.1-201ENST00000505195 936 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC010625.1-201ENST00000511296 403 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 TGIF1P1-201ENST00000558095 802 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC012669.1-201ENST00000603209 283 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC010738.1-201ENST00000604970 987 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC007179.3-201ENST00000604976 235 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AL021368.2-201ENST00000606125 5352 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AC097714.1-201ENST00000511272 1647 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 AP000526.1-201ENST00000603308 1388 ntBASIC3.62□□□□□ -1.83
CPSF3Q9UKF6 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 PWAR6-201ENST00000552334 4618 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 SNORA70.4-201ENST00000365509 134 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AL031679.1-201ENST00000400616 525 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 CYCSP45-201ENST00000402289 315 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 RNA5SP120-201ENST00000410900 112 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 RPL23AP82-202ENST00000427528 469 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 MTCYBP45-201ENST00000435243 565 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 BX322784.1-201ENST00000455793 1077 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 CENPBD1P1-201ENST00000464061 469 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AC023424.2-201ENST00000493479 777 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AC096751.1-202ENST00000502691 1067 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AC006390.1-201ENST00000508068 283 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 APOOP4-201ENST00000513530 597 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 ZNF321P-202ENST00000550843 495 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AC126177.3-201ENST00000551839 688 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AP001029.3-201ENST00000588063 596 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AL031985.2-201ENST00000600955 480 ntBASIC3.61□□□□□ -1.83
CPSF3Q9UKF6 AL390208.1-201ENST00000605885 644 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 333.1 ms