Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 RNA5SP295-201ENST00000362655 121 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 RNU6-173P-201ENST00000364215 104 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 SNORA54-201ENST00000384281 123 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 TPMTP2-201ENST00000414372 726 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC084290.1-201ENST00000434995 374 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 SDCBPP1-201ENST00000440192 890 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 RNU7-136P-201ENST00000458819 69 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 FAM172BP-201ENST00000487497 1089 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC026427.2-201ENST00000506228 536 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 OR5AK1P-201ENST00000524837 922 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 DEFB131D-201ENST00000526803 184 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC037471.2-201ENST00000564941 598 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 DUXAP11-201ENST00000603858 526 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC008121.2-201ENST00000614647 523 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC099506.2-201ENST00000623074 221 ntBASIC3.16□□□□□ -1.9
LHX3Q9UBR4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
LHX3Q9UBR4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
LHX3Q9UBR4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
LHX3Q9UBR4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.15□□□□□ -1.9
LHX3Q9UBR4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
LHX3Q9UBR4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
LHX3Q9UBR4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 RNU6-28P-201ENST00000362378 107 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 SNORD56.3-201ENST00000363507 71 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 SNORD67-201ENST00000390833 111 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 MIR1284-201ENST00000408337 120 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL592310.1-201ENST00000414330 671 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC006960.1-201ENST00000419980 153 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL159169.1-201ENST00000421119 127 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 BEND7P1-201ENST00000422058 457 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 RPS12P18-201ENST00000442381 270 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL671855.1-201ENST00000446875 1203 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC016696.1-201ENST00000446949 318 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 RN7SL442P-201ENST00000473804 320 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC008885.1-201ENST00000514930 301 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 SNORA64.4-201ENST00000516632 81 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC090615.1-201ENST00000577519 154 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 BDH2P1-201ENST00000602288 736 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL022099.1-201ENST00000604551 712 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC004853.1-201ENST00000604902 698 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL390208.1-201ENST00000605885 644 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL050303.3-201ENST00000613704 284 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AL596245.1-201ENST00000618994 362 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 U6.98-201ENST00000637157 84 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 MIR622-201ENST00000638396 96 ntBASIC3.15□□□□□ -1.91
LHX3Q9UBR4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.15□□□□□ -1.91
LHX3Q9UBR4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC002546.1-201ENST00000588041 2504 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 RPL23AP29-201ENST00000397284 453 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 SSR1P2-201ENST00000415208 787 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC007390.1-201ENST00000415722 356 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 YPEL5P1-201ENST00000419731 367 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 MTCYBP45-201ENST00000435243 565 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC004866.2-201ENST00000438285 481 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AL121871.1-201ENST00000443413 436 ntBASIC3.14□□□□□ -1.91
LHX3Q9UBR4 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.14□□□□□ -1.91
LHX3Q9UBR4 USP9YP25-201ENST00000457708 443 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms