Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
TRIM4Q9C037 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
TRIM4Q9C037 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
TRIM4Q9C037 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.58□□□□□ -2
TRIM4Q9C037 MIR26A1-201ENST00000362205 77 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
TRIM4Q9C037 MIR1303-201ENST00000408625 86 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.58□□□□□ -2
TRIM4Q9C037 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
TRIM4Q9C037 RPL7P29-201ENST00000437151 728 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.58□□□□□ -2
TRIM4Q9C037 snoU13.3-201ENST00000459441 104 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 AC133134.1-201ENST00000466800 359 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.58□□□□□ -2
TRIM4Q9C037 AC025459.1-201ENST00000504072 156 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 IGKV2D-36-201ENST00000518643 226 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 IGKV3-31-201ENST00000523109 329 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 SUB1P1-201ENST00000524415 382 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.58□□□□□ -2
TRIM4Q9C037 AC006329.2-201ENST00000611491 394 ntBASIC2.58□□□□□ -2
TRIM4Q9C037 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.58□□□□□ -2
TRIM4Q9C037 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
TRIM4Q9C037 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.58□□□□□ -2
TRIM4Q9C037 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
TRIM4Q9C037 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
TRIM4Q9C037 FRG1BP-201ENST00000278882 761 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 RNU6-263P-201ENST00000363811 107 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 RNU1-112P-201ENST00000364401 164 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 AC007064.1-201ENST00000412238 351 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 RPS20P25-201ENST00000412447 352 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 Z98742.3-201ENST00000418637 326 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.57□□□□□ -2
TRIM4Q9C037 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.57□□□□□ -2
TRIM4Q9C037 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.57□□□□□ -2
TRIM4Q9C037 Z85994.2-201ENST00000434327 452 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.57□□□□□ -2
TRIM4Q9C037 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.57□□□□□ -2
TRIM4Q9C037 AP002345.1-201ENST00000456493 928 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 RPS23P3-201ENST00000470993 430 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 RBM43P1-201ENST00000476891 1081 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 SUMO1P1-201ENST00000497904 306 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 MTND3P24-201ENST00000506306 329 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 AC117522.3-201ENST00000507974 584 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.57□□□□□ -2
TRIM4Q9C037 RNU6-491P-201ENST00000516099 110 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 RNA5SP458-201ENST00000516188 119 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 SNORA31.21-201ENST00000517180 77 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 AL442163.2-201ENST00000553912 710 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.57□□□□□ -2
TRIM4Q9C037 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.57□□□□□ -2
TRIM4Q9C037 AC009220.3-201ENST00000604318 586 ntBASIC2.57□□□□□ -2
TRIM4Q9C037 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.57□□□□□ -2
TRIM4Q9C037 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.57□□□□□ -2
TRIM4Q9C037 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.57□□□□□ -2
TRIM4Q9C037 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.56□□□□□ -2
TRIM4Q9C037 HSPA8P4-201ENST00000511877 1920 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.56□□□□□ -2
TRIM4Q9C037 Y_RNA.4-201ENST00000362333 112 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AF274854.1-201ENST00000413236 615 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.56□□□□□ -2
TRIM4Q9C037 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC2.56□□□□□ -2
TRIM4Q9C037 UBE2D3P2-201ENST00000424409 445 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.56□□□□□ -2
TRIM4Q9C037 RPL23AP15-201ENST00000450202 459 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 RPL23AP31-201ENST00000456160 467 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 GAPDHP39-201ENST00000481866 979 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AC004062.1-201ENST00000509926 645 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AC006445.2-201ENST00000510061 472 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.56□□□□□ -2
TRIM4Q9C037 AC022690.1-201ENST00000526681 550 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AC139103.1-201ENST00000534696 1030 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AC007954.1-201ENST00000554198 494 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.56□□□□□ -2
TRIM4Q9C037 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.56□□□□□ -2
TRIM4Q9C037 AC245036.5-201ENST00000596330 847 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AC010620.2-201ENST00000600135 313 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.56□□□□□ -2
TRIM4Q9C037 AC241585.2-209ENST00000638217 143 ntBASIC2.56□□□□□ -2
TRIM4Q9C037 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC2.56□□□□□ -2
TRIM4Q9C037 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
TRIM4Q9C037 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.56□□□□□ -2
TRIM4Q9C037 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
TRIM4Q9C037 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.55□□□□□ -2
TRIM4Q9C037 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.55□□□□□ -2
TRIM4Q9C037 Y_RNA.338-201ENST00000365320 114 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 MIR142-201ENST00000384835 87 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 MIR627-201ENST00000384979 97 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 AL138827.1-201ENST00000402666 306 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 AC073264.1-201ENST00000411508 416 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.55□□□□□ -2
TRIM4Q9C037 Z75741.2-201ENST00000417272 1167 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 MORF4L1P6-201ENST00000418771 268 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 YWHAZP8-201ENST00000436935 731 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.55□□□□□ -2
TRIM4Q9C037 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.55□□□□□ -2
TRIM4Q9C037 AC087808.1-201ENST00000520501 361 ntBASIC2.55□□□□□ -2
TRIM4Q9C037 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.55□□□□□ -2
TRIM4Q9C037 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.55□□□□□ -2
TRIM4Q9C037 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms