Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC015688.2-201ENST00000584523 262 ntBASIC3.83□□□□□ -1.8
NPHP3Q7Z494 SNRPGP15-201ENST00000600149 222 ntBASIC3.83□□□□□ -1.8
NPHP3Q7Z494 AL592148.2-201ENST00000612210 372 ntBASIC3.83□□□□□ -1.8
NPHP3Q7Z494 AL121895.2-201ENST00000619558 447 ntBASIC3.83□□□□□ -1.8
NPHP3Q7Z494 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.83□□□□□ -1.8
NPHP3Q7Z494 AC004972.1-201ENST00000623934 2209 ntBASIC3.83□□□□□ -1.8
NPHP3Q7Z494 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 ZNF658B-202ENST00000615961 3375 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 U8.2-201ENST00000363156 134 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 RNU6-707P-201ENST00000364647 95 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 MT-TC-201ENST00000387405 66 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AL139039.1-201ENST00000401900 692 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 HMGB3P6-201ENST00000444896 598 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 GAPDHP39-201ENST00000481866 979 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC108729.1-201ENST00000487812 947 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 DYNLL1P6-201ENST00000503440 264 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 SNORA31.21-201ENST00000517180 77 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AP000873.5-201ENST00000533906 236 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC025588.3-201ENST00000604182 274 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC098679.5-201ENST00000624394 571 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AC087821.2-201ENST00000637086 450 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 ZNF37BP-203ENST00000452306 1352 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 AP001486.2-201ENST00000561652 5113 ntBASIC3.82□□□□□ -1.8
NPHP3Q7Z494 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
NPHP3Q7Z494 ZNF734P-201ENST00000419494 1534 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 RNU6-263P-201ENST00000363811 107 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 RNA5SP189-201ENST00000364920 115 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 MIR649-201ENST00000384843 97 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 RNU6-1242P-201ENST00000391052 103 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AL583834.1-201ENST00000406943 343 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 MTATP6P20-201ENST00000414147 562 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC006960.1-201ENST00000419980 153 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC092155.2-201ENST00000454675 477 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 PTGES3P5-201ENST00000455109 434 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 MTCO3P35-201ENST00000485582 781 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC048346.1-201ENST00000510247 144 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 OR4A45P-201ENST00000529954 901 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 OR5D17P-201ENST00000531492 978 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AL389895.1-201ENST00000554127 252 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC007687.1-201ENST00000602704 304 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC113368.1-201ENST00000603736 382 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 MTND3P19-201ENST00000603825 345 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AL138478.1-201ENST00000612252 832 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 MFSD8-245ENST00000641743 948 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.81□□□□□ -1.8
NPHP3Q7Z494 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
NPHP3Q7Z494 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NPHP3Q7Z494 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.8□□□□□ -1.8
NPHP3Q7Z494 AP003122.5-201ENST00000527668 3766 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NPHP3Q7Z494 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NPHP3Q7Z494 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NPHP3Q7Z494 Y_RNA.493-201ENST00000384422 102 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 RNU6-906P-201ENST00000384700 70 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 AL121972.1-201ENST00000402023 252 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 RN7SKP192-201ENST00000411291 327 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 SSR1P2-201ENST00000415208 787 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 RPS3AP37-201ENST00000419176 745 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 AL049610.1-201ENST00000423374 372 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 USP9YP24-201ENST00000434374 697 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 USP9YP17-201ENST00000444617 696 ntBASIC3.8□□□□□ -1.8
NPHP3Q7Z494 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.8□□□□□ -1.8
NPHP3Q7Z494 ZNF886P-201ENST00000450781 723 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms