Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.61□□□□□ -2.15
USF3Q68DE3 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.61□□□□□ -2.15
USF3Q68DE3 PABPC1P9-201ENST00000426076 1612 ntBASIC1.61□□□□□ -2.15
USF3Q68DE3 RNU6-707P-201ENST00000364647 95 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 RNU6-603P-201ENST00000411403 107 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.6□□□□□ -2.15
USF3Q68DE3 HMGB3P21-201ENST00000452483 547 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 TVP23BP2-201ENST00000455082 615 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.6□□□□□ -2.15
USF3Q68DE3 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC1.6□□□□□ -2.15
USF3Q68DE3 RNA5SP182-201ENST00000516064 82 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 MIR4303-201ENST00000581299 66 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 RPP40P2-201ENST00000603596 712 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AK6-205ENST00000618980 483 ntTSL 2 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC091046.2-201ENST00000620775 665 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AC012150.2-201ENST00000621300 544 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AC011155.1-201ENST00000316512 456 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AP1B1P2-201ENST00000416196 106 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 MTND1P23-201ENST00000416931 372 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC005912.1-201ENST00000495392 255 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 MLLT10P2-201ENST00000506434 249 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 RN7SKP82-201ENST00000516786 223 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 RNU6-56P-201ENST00000516986 93 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AP004242.1-201ENST00000533701 349 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC126177.3-201ENST00000551839 688 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC1.6□□□□□ -2.15
USF3Q68DE3 AC009318.3-201ENST00000616916 503 ntBASIC1.6□□□□□ -2.15
USF3Q68DE3 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
USF3Q68DE3 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.6□□□□□ -2.15
USF3Q68DE3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.59□□□□□ -2.15
USF3Q68DE3 AL021407.1-201ENST00000404531 386 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 RPL19P1-201ENST00000411635 428 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC1.59□□□□□ -2.15
USF3Q68DE3 SNRPGP9-201ENST00000456025 225 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 SNRPGP3-201ENST00000469405 227 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 RPS29P20-201ENST00000489592 171 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 SNX5P1-201ENST00000505757 1041 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 AC117532.1-201ENST00000514638 323 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 AC090953.1-201ENST00000604305 1092 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 HMGN2P28-201ENST00000606102 262 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 CFTRP2-201ENST00000634304 199 ntBASIC1.59□□□□□ -2.15
USF3Q68DE3 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.15
USF3Q68DE3 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.59□□□□□ -2.16
USF3Q68DE3 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
USF3Q68DE3 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
USF3Q68DE3 MIR499A-201ENST00000384903 122 ntBASIC1.59□□□□□ -2.16
USF3Q68DE3 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.59□□□□□ -2.16
USF3Q68DE3 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.59□□□□□ -2.16
USF3Q68DE3 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.59□□□□□ -2.16
USF3Q68DE3 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.59□□□□□ -2.16
USF3Q68DE3 C1GALT1P1-201ENST00000548895 1089 ntBASIC1.59□□□□□ -2.16
USF3Q68DE3 ACTR3BP3-201ENST00000565577 979 ntBASIC1.59□□□□□ -2.16
USF3Q68DE3 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.59□□□□□ -2.16
USF3Q68DE3 MIR4255-201ENST00000579351 72 ntBASIC1.59□□□□□ -2.16
USF3Q68DE3 MIR5089-201ENST00000580047 84 ntBASIC1.59□□□□□ -2.16
USF3Q68DE3 AC108479.2-201ENST00000617314 601 ntBASIC1.59□□□□□ -2.16
USF3Q68DE3 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.16
USF3Q68DE3 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
USF3Q68DE3 U8.10-201ENST00000384260 133 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 RNU2-20P-201ENST00000410425 191 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.58□□□□□ -2.16
USF3Q68DE3 RPS15AP7-201ENST00000439294 405 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC1.58□□□□□ -2.16
USF3Q68DE3 RPL7P31-201ENST00000450192 724 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 AC092754.2-201ENST00000463506 460 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 FAM92A1P1-201ENST00000528023 890 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 MIR5694-201ENST00000581190 76 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 AP001029.3-201ENST00000588063 596 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 SNHG22-203ENST00000617833 660 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.58□□□□□ -2.16
USF3Q68DE3 NR1H5P-201ENST00000452683 1377 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 AC011978.2-201ENST00000569835 2054 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.58□□□□□ -2.16
USF3Q68DE3 MIR591-201ENST00000385290 95 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 HMGN2P38-201ENST00000423806 265 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 NDUFB4P6-201ENST00000436819 366 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC1.58□□□□□ -2.16
USF3Q68DE3 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.58□□□□□ -2.16
USF3Q68DE3 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.58□□□□□ -2.16
USF3Q68DE3 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.58□□□□□ -2.16
USF3Q68DE3 snoZ278.1-201ENST00000517059 112 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.58□□□□□ -2.16
USF3Q68DE3 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.58□□□□□ -2.16
USF3Q68DE3 SNORD39.2-201ENST00000579995 76 ntBASIC1.58□□□□□ -2.16
USF3Q68DE3 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.58□□□□□ -2.16
USF3Q68DE3 AC027514.1-201ENST00000588561 1603 ntBASIC1.57□□□□□ -2.16
USF3Q68DE3 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
USF3Q68DE3 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC1.57□□□□□ -2.16
USF3Q68DE3 RPS7P5-201ENST00000441482 581 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms