Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 MTND1P9-201ENST00000453775 944 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 RN7SL601P-201ENST00000471221 293 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC069499.1-201ENST00000489433 509 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC080014.1-201ENST00000496877 1201 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC078918.1-201ENST00000498515 228 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC117532.1-201ENST00000514638 323 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AP004371.1-201ENST00000525240 214 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AP003497.1-201ENST00000528472 562 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 CR383656.7-201ENST00000548164 174 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AL121603.1-201ENST00000553815 142 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC012182.1-201ENST00000570133 895 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC064807.4-201ENST00000607201 407 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AC107294.1-201ENST00000609524 467 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 AL645937.1-201ENST00000641739 1652 ntBASIC3.77□□□□□ -1.81
COL28A1Q2UY09 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL28A1Q2UY09 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AL365361.1-201ENST00000566942 3481 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 MAPK10-372ENST00000641954 3413 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 Z98941.1-201ENST00000407764 100 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 OR1AA1P-201ENST00000419597 916 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 RPL7P36-201ENST00000444633 681 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC104308.1-201ENST00000454621 333 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AP000797.1-201ENST00000478870 387 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC006517.1-201ENST00000480485 328 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC023141.12-201ENST00000512399 199 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 IGHV3-32-201ENST00000519182 355 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 SETP2-201ENST00000553886 926 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 RPL23AP87-202ENST00000573039 466 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AC012669.1-201ENST00000603209 283 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AL049634.3-201ENST00000604968 457 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AP005264.7-201ENST00000625003 745 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 AL157700.1-201ENST00000561973 1432 ntBASIC3.76□□□□□ -1.81
COL28A1Q2UY09 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL28A1Q2UY09 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 PNPT1P2-201ENST00000456768 2050 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 CCT4P2-201ENST00000233836 1548 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RPS4XP5-202ENST00000449995 1334 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RNA5SP432-201ENST00000362480 116 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RNU6-1155P-201ENST00000363554 107 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 SNORA7.2-201ENST00000364446 145 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 SNORA3.3-201ENST00000408712 125 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms