Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 NIPA2P2-201ENST00000496376 1083 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 FGF7P4-201ENST00000509595 295 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC105417.1-201ENST00000514691 285 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 RNU2-10P-201ENST00000516375 211 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 RNU6-64P-201ENST00000517119 105 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 SUMO2P20-201ENST00000520803 283 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC107953.1-201ENST00000522216 297 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA4Q00056 OR5BN1P-201ENST00000532955 829 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA4Q00056 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA4Q00056 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA4Q00056 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA4Q00056 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA4Q00056 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXA4Q00056 VN1R80P-201ENST00000597126 338 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA4Q00056 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA4Q00056 AL355812.1-201ENST00000603215 216 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC010591.1-201ENST00000603941 649 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AL160290.3-201ENST00000604869 165 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC090948.1-201ENST00000607464 549 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AC105429.2-201ENST00000610567 517 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 MIR6820-201ENST00000611508 62 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 AL122125.1-201ENST00000616999 600 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA4Q00056 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA4Q00056 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.81□□□□□ -1.8
HOXA4Q00056 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA4Q00056 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA4Q00056 SAMMSON-213ENST00000641336 1521 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA4Q00056 NXPH1-205ENST00000602349 1953 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 MTND4P23-201ENST00000447723 1363 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
HOXA4Q00056 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA4Q00056 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA4Q00056 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 AC139713.2-214ENST00000642059 1811 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 HSPE1P11-201ENST00000339579 310 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA4Q00056 SNORA62.1-201ENST00000364287 154 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 XGY1-201ENST00000381172 446 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 SNORA32.2-201ENST00000384049 122 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AL122016.1-201ENST00000403365 367 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA4Q00056 Y_RNA.615-201ENST00000410769 117 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RNA5SP107-201ENST00000411358 122 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RNU6-516P-201ENST00000411381 104 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA4Q00056 DUTP6-201ENST00000425573 462 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 MED13P1-201ENST00000428342 171 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RPL23AP43-201ENST00000446445 471 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RPL7P12-201ENST00000446719 750 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RPS29P15-201ENST00000458329 171 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RPL7L1P8-201ENST00000469911 741 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RPS29P22-201ENST00000472363 168 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RPL38P4-201ENST00000502376 214 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXA4Q00056 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA4Q00056 RNA5SP446-201ENST00000515955 82 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RN7SKP219-201ENST00000516825 296 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RNU7-30P-201ENST00000516835 62 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 RN7SKP92-201ENST00000517266 244 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 NARSP2-201ENST00000518524 679 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 BTF3P12-201ENST00000519620 469 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 FAM60DP-201ENST00000524174 632 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA4Q00056 AC022690.1-201ENST00000526681 550 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA4Q00056 DEFB108D-201ENST00000527787 222 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AC093027.1-201ENST00000546698 429 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 CR383656.7-201ENST00000548164 174 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AC078814.3-201ENST00000553036 491 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA4Q00056 AC037471.2-201ENST00000564941 598 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AC084783.1-201ENST00000565846 910 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 MIR4775-201ENST00000581168 75 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA4Q00056 MIR4715-201ENST00000584117 79 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AL132765.2-201ENST00000610812 351 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA4Q00056 AC009248.2-201ENST00000619826 254 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AP000843.1-201ENST00000624880 701 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA4Q00056 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA4Q00056 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA4Q00056 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA4Q00056 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA4Q00056 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 AC009951.1-201ENST00000623674 2614 ntBASIC3.8□□□□□ -1.8
HOXA4Q00056 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA4Q00056 AC139769.1-204ENST00000472297 1931 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms