Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA1P55317 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.33□□□□□ -2.04
FOXA1P55317 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA1P55317 ELOCP13-201ENST00000443934 329 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 RPL7P52-201ENST00000449200 742 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA1P55317 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 RPL32P14-201ENST00000463196 378 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 VN1R104P-201ENST00000505115 1009 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AC069306.1-201ENST00000507006 843 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 AC104057.1-201ENST00000515547 497 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 AC092470.1-201ENST00000546187 132 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AC078814.3-201ENST00000553036 491 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA1P55317 AC107954.1-201ENST00000565906 727 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AC022069.1-201ENST00000582910 658 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 OR2AS2P-201ENST00000606902 342 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA1P55317 AC092608.2-201ENST00000624427 218 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AL356094.1-201ENST00000624663 1212 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA1P55317 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA1P55317 AL512283.1-201ENST00000606756 1384 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 MTCO1P4-201ENST00000520516 1409 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 ZNF849P-201ENST00000594711 1566 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.32□□□□□ -2.04
FOXA1P55317 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
FOXA1P55317 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA1P55317 OR51A3P-201ENST00000413596 924 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 SSXP9-201ENST00000417503 292 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA1P55317 AC019097.1-201ENST00000424783 735 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AC063976.3-201ENST00000426849 329 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA1P55317 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA1P55317 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA1P55317 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA1P55317 CDC42P1-201ENST00000456658 548 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 NAP1L1P3-201ENST00000462291 880 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 SYPL1P1-201ENST00000473622 768 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 RPL36AP51-201ENST00000487216 318 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA1P55317 MTCO2P32-201ENST00000514865 403 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AP003168.1-201ENST00000530091 307 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
FOXA1P55317 NIFKP8-201ENST00000560500 874 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA1P55317 BPTFP1-201ENST00000579209 492 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AC124283.4-201ENST00000581815 456 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AC067747.1-201ENST00000608026 250 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AC020923.1-201ENST00000624021 917 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA1P55317 MTND5P31-201ENST00000419366 1374 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 ZNF271P-202ENST00000465539 1970 ntBASIC2.32□□□□□ -2.04
FOXA1P55317 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA1P55317 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA1P55317 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA1P55317 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
FOXA1P55317 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA1P55317 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 MAPK10-322ENST00000641485 4530 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA1P55317 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA1P55317 RNU6-50P-201ENST00000362356 103 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 RNU6-263P-201ENST00000363811 107 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 RNU1-109P-201ENST00000383960 147 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 RNU6-629P-201ENST00000384061 103 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 RNU6-837P-201ENST00000391056 108 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 ARF4P3-201ENST00000397387 509 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AL359511.1-201ENST00000402970 211 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
FOXA1P55317 U3.37-201ENST00000408528 213 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC092638.1-201ENST00000411966 1275 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 RAP1BP1-201ENST00000412709 553 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA1P55317 OFD1P18Y-201ENST00000420889 959 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA1P55317 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.31□□□□□ -2.04
FOXA1P55317 MTCO2P1-201ENST00000424648 477 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA1P55317 UBE2D3P3-201ENST00000426992 425 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC096632.1-201ENST00000427395 310 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC002542.1-201ENST00000440683 193 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AL158053.1-201ENST00000441503 453 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA1P55317 AC008379.1-201ENST00000463655 464 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 MTCO3P35-201ENST00000485582 781 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA1P55317 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA1P55317 RNU6-711P-201ENST00000517255 106 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA1P55317 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
FOXA1P55317 AP003049.1-201ENST00000529418 457 ntBASIC2.31□□□□□ -2.04
FOXA1P55317 AC109635.4-202ENST00000531666 412 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms