Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.91□□□□□ -1.78
PTPN9P43378 RNU6-1207P-201ENST00000384343 107 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 RNU6-1119P-201ENST00000384349 108 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
PTPN9P43378 SNORA57.1-201ENST00000391227 145 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AL356967.1-201ENST00000406305 431 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 HSPE1P8-201ENST00000406997 288 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 MIR1193-201ENST00000408109 78 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 HMGN1P14-201ENST00000412459 517 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.91□□□□□ -1.78
PTPN9P43378 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.91□□□□□ -1.78
PTPN9P43378 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN9P43378 RPS24P1-201ENST00000438550 371 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 RPS29P7-201ENST00000439662 171 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.91□□□□□ -1.78
PTPN9P43378 MTND1P9-201ENST00000453775 944 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 ANP32BP2-201ENST00000454525 545 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 CFTRP1-201ENST00000456646 183 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 SNORD121B-201ENST00000458838 81 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AL133162.1-201ENST00000463228 453 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 ST13P14-201ENST00000474095 734 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN9P43378 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN9P43378 AC006390.1-201ENST00000508068 283 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN9P43378 NDUFB4P9-201ENST00000511646 388 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN9P43378 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.91□□□□□ -1.78
PTPN9P43378 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN9P43378 HSPE1P5-201ENST00000561489 272 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.91□□□□□ -1.78
PTPN9P43378 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN9P43378 MIR5187-201ENST00000583479 76 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.91□□□□□ -1.78
PTPN9P43378 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.91□□□□□ -1.78
PTPN9P43378 AC112191.3-201ENST00000604371 277 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AL359999.1-201ENST00000604513 294 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AL451086.1-201ENST00000605596 223 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AC024941.1-201ENST00000612250 334 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 AL590240.3-201ENST00000621416 943 ntBASIC3.91□□□□□ -1.78
PTPN9P43378 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.91□□□□□ -1.78
PTPN9P43378 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN9P43378 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PTPN9P43378 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.9□□□□□ -1.78
PTPN9P43378 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
PTPN9P43378 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.9□□□□□ -1.78
PTPN9P43378 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
PTPN9P43378 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
PTPN9P43378 RNU1-18P-201ENST00000363062 164 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 RNU6-97P-201ENST00000363387 104 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 RNU6-853P-201ENST00000364306 107 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 OR5H15-201ENST00000383696 930 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 RNU6-533P-201ENST00000384144 107 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 Y_RNA.608-201ENST00000410647 95 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 RNU2-16P-201ENST00000410712 136 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 MTCO3P41-201ENST00000414801 328 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AL159169.1-201ENST00000421119 127 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AL356583.2-201ENST00000426536 280 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 BX890604.2-201ENST00000427883 474 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PTPN9P43378 AL590365.1-201ENST00000450788 243 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 MTCO1P42-201ENST00000457379 726 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AC021382.1-201ENST00000483523 359 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN9P43378 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN9P43378 NPM1P41-201ENST00000512920 831 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.9□□□□□ -1.79
PTPN9P43378 RNU6-201P-201ENST00000517100 61 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN9P43378 AP002748.2-201ENST00000528671 348 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN9P43378 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 MIR5685-201ENST00000579080 79 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.9□□□□□ -1.79
PTPN9P43378 AC090616.5-202ENST00000582111 297 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 MIR548AB-201ENST00000584917 84 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.9□□□□□ -1.79
PTPN9P43378 AC079089.3-201ENST00000603094 673 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 RNU1-30P-201ENST00000606575 163 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AC090425.2-201ENST00000608818 501 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AP000254.1-201ENST00000609934 520 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 AC109347.2-201ENST00000610220 349 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PTPN9P43378 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN9P43378 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.9□□□□□ -1.79
PTPN9P43378 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
PTPN9P43378 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PTPN9P43378 TEX21P-201ENST00000447107 1476 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.9□□□□□ -1.79
PTPN9P43378 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
PTPN9P43378 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.9□□□□□ -1.79
PTPN9P43378 AC244517.1-201ENST00000606030 2086 ntBASIC3.9□□□□□ -1.79
PTPN9P43378 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PTPN9P43378 TNPO1P3-201ENST00000436471 2662 ntBASIC3.89□□□□□ -1.79
PTPN9P43378 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
PTPN9P43378 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.89□□□□□ -1.79
PTPN9P43378 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
PTPN9P43378 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PTPN9P43378 SNORD6-201ENST00000365444 73 ntBASIC3.89□□□□□ -1.79
PTPN9P43378 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms