Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD3P31249 AC011998.1-201ENST00000433403 117 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 GPR143P-201ENST00000434155 205 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 USP9YP8-201ENST00000441913 500 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AL031584.1-201ENST00000447169 754 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 NUTF2P3-201ENST00000448540 384 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD3P31249 RPS3AP50-201ENST00000487064 803 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 RPL36AP51-201ENST00000487216 318 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC018710.1-201ENST00000506509 158 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD3P31249 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 AC025465.4-201ENST00000513422 638 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 RNA5SP401-201ENST00000515920 127 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 RNU6-835P-201ENST00000516974 104 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD3P31249 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD3P31249 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD3P31249 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD3P31249 SETP7-201ENST00000552169 453 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AL359212.1-201ENST00000556608 614 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 BNIP3P5-201ENST00000562290 498 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC007224.1-201ENST00000564410 144 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 OR4K8P-201ENST00000578842 1048 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXD3P31249 MIR3138-201ENST00000585238 82 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC060780.3-201ENST00000589464 80 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 IPO5P1-202ENST00000600039 287 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AL162413.1-201ENST00000603198 110 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 LLPHP1-201ENST00000603571 367 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 RMST_3.1-201ENST00000611651 109 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC025253.1-201ENST00000613623 543 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 Y_RNA.804-201ENST00000615262 101 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC114781.5-201ENST00000615297 108 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 uc_338.12-201ENST00000616344 181 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD3P31249 AC022106.2-201ENST00000620114 757 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 AC067931.1-201ENST00000624190 671 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 AC005609.4-201ENST00000625071 447 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 FER-210ENST00000628534 558 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD3P31249 AL133243.3-201ENST00000617415 3004 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 AC125257.1-201ENST00000560400 2930 ntBASIC3.49□□□□□ -1.85
HOXD3P31249 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD3P31249 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD3P31249 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD3P31249 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.48□□□□□ -1.85
HOXD3P31249 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 AL356489.2-201ENST00000566968 3528 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 AL354685.2-201ENST00000448218 1447 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RNU6-1120P-201ENST00000362988 108 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RNU6-108P-201ENST00000365558 107 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 RNU6-74P-201ENST00000384235 107 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 Y_RNA.481-201ENST00000384373 102 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 SNORA70E-201ENST00000384492 135 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 MIR659-201ENST00000384963 97 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 SNORA57.1-201ENST00000391227 145 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 AL356776.1-201ENST00000406574 447 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RNA5SP56-201ENST00000410277 118 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RNU6-1068P-201ENST00000410958 103 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 MRPL50P2-201ENST00000416821 482 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD3P31249 OR1AA1P-201ENST00000419597 916 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 AL391219.1-201ENST00000422570 483 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXD3P31249 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD3P31249 RPS26P2-201ENST00000440331 348 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD3P31249 MTCO2P29-201ENST00000465212 189 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AL049714.1-201ENST00000466686 347 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RN7SL303P-201ENST00000469773 251 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 STMN1P2-201ENST00000508435 439 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD3P31249 FTH1P21-201ENST00000512179 511 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RN7SKP46-201ENST00000515942 234 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 RNU6-875P-201ENST00000516488 106 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AF235103.2-201ENST00000525753 346 ntBASIC3.48□□□□□ -1.85
HOXD3P31249 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD3P31249 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms