Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AP003355.1-201ENST00000518956 587 ntBASIC2.6□□□□□ -1.99
USF1P22415 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.6□□□□□ -1.99
USF1P22415 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.6□□□□□ -1.99
USF1P22415 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.6□□□□□ -1.99
USF1P22415 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.6□□□□□ -1.99
USF1P22415 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.6□□□□□ -1.99
USF1P22415 AC034105.3-201ENST00000565294 442 ntBASIC2.6□□□□□ -1.99
USF1P22415 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.6□□□□□ -1.99
USF1P22415 PRELID3BP8-201ENST00000604148 295 ntBASIC2.6□□□□□ -1.99
USF1P22415 U1.23-201ENST00000610293 146 ntBASIC2.6□□□□□ -1.99
USF1P22415 AC084824.5-201ENST00000612009 413 ntBASIC2.6□□□□□ -1.99
USF1P22415 RNU1-68P-201ENST00000615382 146 ntBASIC2.6□□□□□ -1.99
USF1P22415 CYCSP41-201ENST00000616920 296 ntBASIC2.6□□□□□ -1.99
USF1P22415 MIR6076-201ENST00000617521 113 ntBASIC2.6□□□□□ -1.99
USF1P22415 U1.39-201ENST00000621562 146 ntBASIC2.6□□□□□ -1.99
USF1P22415 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC2.6□□□□□ -1.99
USF1P22415 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.6□□□□□ -1.99
USF1P22415 AC006927.2-201ENST00000639256 389 ntBASIC2.6□□□□□ -1.99
USF1P22415 AC108206.1-201ENST00000570186 4159 ntBASIC2.6□□□□□ -1.99
USF1P22415 AL513185.3-201ENST00000433335 1300 ntBASIC2.6□□□□□ -1.99
USF1P22415 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.6□□□□□ -1.99
USF1P22415 AC008264.2-201ENST00000610193 3731 ntBASIC2.6□□□□□ -1.99
USF1P22415 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
USF1P22415 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
USF1P22415 U8.9-201ENST00000365667 134 ntBASIC2.59□□□□□ -1.99
USF1P22415 MCTS2P-201ENST00000394552 546 ntBASIC2.59□□□□□ -1.99
USF1P22415 RPL21P3-201ENST00000395517 478 ntBASIC2.59□□□□□ -1.99
USF1P22415 RPL7P25-201ENST00000404151 721 ntBASIC2.59□□□□□ -1.99
USF1P22415 FAT1P1-201ENST00000406588 507 ntBASIC2.59□□□□□ -1.99
USF1P22415 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.59□□□□□ -1.99
USF1P22415 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.59□□□□□ -1.99
USF1P22415 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.59□□□□□ -1.99
USF1P22415 AC092634.2-201ENST00000428146 1010 ntBASIC2.59□□□□□ -1.99
USF1P22415 AC011242.1-201ENST00000433596 1158 ntBASIC2.59□□□□□ -1.99
USF1P22415 YWHAZP7-201ENST00000436906 631 ntBASIC2.59□□□□□ -1.99
USF1P22415 AC108734.1-201ENST00000439549 399 ntBASIC2.59□□□□□ -1.99
USF1P22415 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.59□□□□□ -1.99
USF1P22415 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.59□□□□□ -1.99
USF1P22415 AC016696.1-201ENST00000446949 318 ntBASIC2.59□□□□□ -1.99
USF1P22415 OR6K5P-201ENST00000447050 945 ntBASIC2.59□□□□□ -1.99
USF1P22415 AC146507.2-201ENST00000460608 476 ntBASIC2.59□□□□□ -1.99
USF1P22415 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
USF1P22415 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
USF1P22415 AC093278.1-201ENST00000494700 600 ntBASIC2.59□□□□□ -1.99
USF1P22415 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.59□□□□□ -1.99
USF1P22415 CBX3P3-201ENST00000508108 532 ntBASIC2.59□□□□□ -1.99
USF1P22415 AC010374.2-201ENST00000512933 535 ntBASIC2.59□□□□□ -1.99
USF1P22415 AP001207.2-201ENST00000519490 539 ntBASIC2.59□□□□□ -1.99
USF1P22415 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.59□□□□□ -1.99
USF1P22415 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.59□□□□□ -1.99
USF1P22415 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.59□□□□□ -1.99
USF1P22415 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC2.59□□□□□ -1.99
USF1P22415 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.59□□□□□ -1.99
USF1P22415 AL157394.1-201ENST00000562983 1224 ntBASIC2.59□□□□□ -1.99
USF1P22415 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.59□□□□□ -1.99
USF1P22415 AC006023.1-201ENST00000603944 259 ntBASIC2.59□□□□□ -1.99
USF1P22415 AC120053.1-201ENST00000607706 736 ntBASIC2.59□□□□□ -1.99
USF1P22415 AL356585.4-201ENST00000623078 1229 ntBASIC2.59□□□□□ -1.99
USF1P22415 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.59□□□□□ -1.99
USF1P22415 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.59□□□□□ -1.99
USF1P22415 LRRC77P-213ENST00000637727 880 ntBASIC2.59□□□□□ -1.99
USF1P22415 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
USF1P22415 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.59□□□□□ -2
USF1P22415 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.59□□□□□ -2
USF1P22415 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USF1P22415 MIR22-201ENST00000362190 85 ntBASIC2.58□□□□□ -2
USF1P22415 RNU6-1155P-201ENST00000363554 107 ntBASIC2.58□□□□□ -2
USF1P22415 RNU6-236P-201ENST00000363886 106 ntBASIC2.58□□□□□ -2
USF1P22415 SNORA14A-201ENST00000364773 135 ntBASIC2.58□□□□□ -2
USF1P22415 SNORA51.4-201ENST00000364993 124 ntBASIC2.58□□□□□ -2
USF1P22415 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC2.58□□□□□ -2
USF1P22415 RNA5SP38-201ENST00000410750 119 ntBASIC2.58□□□□□ -2
USF1P22415 EEF1A1P41-201ENST00000414667 207 ntBASIC2.58□□□□□ -2
USF1P22415 SSXP9-201ENST00000417503 292 ntBASIC2.58□□□□□ -2
USF1P22415 AL137014.1-201ENST00000420490 1226 ntBASIC2.58□□□□□ -2
USF1P22415 PSMA6P3-201ENST00000428242 164 ntBASIC2.58□□□□□ -2
USF1P22415 COX6CP2-201ENST00000444980 225 ntBASIC2.58□□□□□ -2
USF1P22415 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC2.58□□□□□ -2
USF1P22415 VN1R10P-201ENST00000447106 875 ntBASIC2.58□□□□□ -2
USF1P22415 Z82190.1-201ENST00000454534 490 ntBASIC2.58□□□□□ -2
USF1P22415 AC244505.3-201ENST00000454598 187 ntBASIC2.58□□□□□ -2
USF1P22415 AC004924.1-201ENST00000480160 781 ntBASIC2.58□□□□□ -2
USF1P22415 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.58□□□□□ -2
USF1P22415 MTCO3P27-201ENST00000514397 196 ntBASIC2.58□□□□□ -2
USF1P22415 AC122134.1-202ENST00000569111 1201 ntBASIC2.58□□□□□ -2
USF1P22415 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.58□□□□□ -2
USF1P22415 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.58□□□□□ -2
USF1P22415 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.58□□□□□ -2
USF1P22415 AC078899.3-201ENST00000599065 212 ntBASIC2.58□□□□□ -2
USF1P22415 RPL12P50-201ENST00000603116 116 ntBASIC2.58□□□□□ -2
USF1P22415 AC096947.1-201ENST00000603233 470 ntBASIC2.58□□□□□ -2
USF1P22415 AL022099.1-201ENST00000604551 712 ntBASIC2.58□□□□□ -2
USF1P22415 AL033523.1-201ENST00000605153 153 ntBASIC2.58□□□□□ -2
USF1P22415 AC012443.1-201ENST00000605605 231 ntBASIC2.58□□□□□ -2
USF1P22415 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
USF1P22415 AC022509.4-201ENST00000621404 572 ntBASIC2.58□□□□□ -2
USF1P22415 AC073348.1-201ENST00000623002 331 ntBASIC2.58□□□□□ -2
USF1P22415 AL157770.1-201ENST00000623049 439 ntBASIC2.58□□□□□ -2
USF1P22415 AC109454.4-201ENST00000623411 649 ntBASIC2.58□□□□□ -2
USF1P22415 AC087821.2-201ENST00000637086 450 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms