Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PTP4A1P6-201ENST00000531034 478 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 MTATP6P3-201ENST00000581686 676 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 AC103987.3-201ENST00000582071 292 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC1.93□□□□□ -2.1
COL6A3P12111 AC010680.1-201ENST00000590024 3590 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A3P12111 AC002546.1-201ENST00000588041 2504 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A3P12111 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC1.93□□□□□ -2.1
COL6A3P12111 Y_RNA.471-201ENST00000384312 102 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 UQCRFS1P3-201ENST00000407697 385 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 PAICSP7-201ENST00000419829 962 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.93□□□□□ -2.1
COL6A3P12111 ATP5F1P1-201ENST00000433775 569 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC1.93□□□□□ -2.1
COL6A3P12111 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A3P12111 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A3P12111 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.92□□□□□ -2.1
COL6A3P12111 RAD23BP2-201ENST00000416003 1207 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 MUPP-201ENST00000438111 566 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.92□□□□□ -2.1
COL6A3P12111 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC1.92□□□□□ -2.1
COL6A3P12111 MIR5089-201ENST00000580047 84 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC1.92□□□□□ -2.1
COL6A3P12111 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.92□□□□□ -2.1
COL6A3P12111 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL6A3P12111 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL6A3P12111 AC234781.4-201ENST00000419384 244 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 AP000852.1-201ENST00000472460 573 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.92□□□□□ -2.1
COL6A3P12111 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.92□□□□□ -2.1
COL6A3P12111 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
COL6A3P12111 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC1.92□□□□□ -2.1
COL6A3P12111 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
COL6A3P12111 AC240504.1-201ENST00000395709 845 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 AC234781.2-201ENST00000426370 994 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 AIG1P1-201ENST00000503376 148 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 FAM92A1P1-201ENST00000528023 890 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.92□□□□□ -2.1
COL6A3P12111 MIR4723-201ENST00000585070 81 ntBASIC1.92□□□□□ -2.1
COL6A3P12111 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
COL6A3P12111 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
COL6A3P12111 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.91□□□□□ -2.1
COL6A3P12111 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.91□□□□□ -2.1
COL6A3P12111 AC023128.2-201ENST00000420880 1223 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 RPL30P3-201ENST00000424262 333 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 SAR1AP4-201ENST00000429225 591 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 AC091544.1-201ENST00000484702 348 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
COL6A3P12111 AC116158.1-201ENST00000560231 2129 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
COL6A3P12111 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
COL6A3P12111 AL138785.1-201ENST00000425821 331 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 CBWD4P-201ENST00000445695 655 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 MTCYBP17-201ENST00000503579 789 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 AC109464.2-201ENST00000510242 943 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 ZDHHC20P3-201ENST00000531576 336 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 MTND4LP5-201ENST00000605152 292 ntBASIC1.91□□□□□ -2.1
COL6A3P12111 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
COL6A3P12111 RNU1-139P-201ENST00000391307 165 ntBASIC1.9□□□□□ -2.1
COL6A3P12111 AC005534.2-201ENST00000431047 433 ntBASIC1.9□□□□□ -2.1
COL6A3P12111 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
COL6A3P12111 AL359273.1-201ENST00000510918 627 ntBASIC1.9□□□□□ -2.1
COL6A3P12111 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.9□□□□□ -2.1
COL6A3P12111 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.9□□□□□ -2.1
COL6A3P12111 CYP3A51P-201ENST00000633513 256 ntBASIC1.9□□□□□ -2.1
COL6A3P12111 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
COL6A3P12111 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.9□□□□□ -2.11
COL6A3P12111 RPL36AP33-201ENST00000450395 310 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 EIF2S2P4-201ENST00000461070 984 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 AC004486.1-201ENST00000546846 233 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
COL6A3P12111 OR4G11P-202ENST00000642116 1414 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
COL6A3P12111 RNU6-249P-201ENST00000363016 102 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 RNU6-1080P-201ENST00000383982 107 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 AL136133.1-201ENST00000413694 376 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 AC027124.2-201ENST00000428249 105 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 RPS15AP36-201ENST00000492022 382 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.9□□□□□ -2.11
COL6A3P12111 AL389895.1-201ENST00000554127 252 ntBASIC1.9□□□□□ -2.11
COL6A3P12111 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC1.9□□□□□ -2.11
COL6A3P12111 RPL31P2-201ENST00000413849 377 ntBASIC1.89□□□□□ -2.11
COL6A3P12111 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.89□□□□□ -2.11
COL6A3P12111 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.89□□□□□ -2.11
COL6A3P12111 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.89□□□□□ -2.11
COL6A3P12111 RPPH1-2P-201ENST00000516688 293 ntBASIC1.89□□□□□ -2.11
COL6A3P12111 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.89□□□□□ -2.11
COL6A3P12111 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.89□□□□□ -2.11
COL6A3P12111 AC006254.3-201ENST00000603353 884 ntBASIC1.89□□□□□ -2.11
COL6A3P12111 AC091895.1-201ENST00000624494 256 ntBASIC1.89□□□□□ -2.11
COL6A3P12111 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
COL6A3P12111 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
COL6A3P12111 USP9YP8-201ENST00000441913 500 ntBASIC1.89□□□□□ -2.11
COL6A3P12111 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.89□□□□□ -2.11
COL6A3P12111 RNA5SP436-201ENST00000516020 115 ntBASIC1.89□□□□□ -2.11
COL6A3P12111 AC073387.2-201ENST00000604797 784 ntBASIC1.89□□□□□ -2.11
COL6A3P12111 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.89□□□□□ -2.11
COL6A3P12111 MIR6788-201ENST00000618842 66 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms