Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 POU5F1P7-201ENST00000508759 541 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 LTV1P1-201ENST00000510683 1237 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.21□□□□□ -1.9
HOXD4P09016 RNA5SP208-201ENST00000516156 78 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 OR5D17P-201ENST00000531492 978 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD4P09016 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 TGIF1P1-201ENST00000558095 802 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD4P09016 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 SULT1C2P1-202ENST00000562418 459 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC011260.1-201ENST00000578420 472 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 MIR3915-201ENST00000578518 97 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 OR4G1P-201ENST00000588632 938 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 DUXAP11-201ENST00000603858 526 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC105129.3-201ENST00000605455 485 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 OR2AS2P-201ENST00000606902 342 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC092650.2-201ENST00000619984 902 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC068137.4-201ENST00000638485 296 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 ELL2P3-201ENST00000457883 1602 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC117529.2-201ENST00000512159 2068 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AL390862.1-201ENST00000635467 1469 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD4P09016 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD4P09016 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 AL359893.1-201ENST00000447628 1580 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD4P09016 MTND5P24-201ENST00000438892 1767 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD4P09016 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
HOXD4P09016 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD4P09016 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HOXD4P09016 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HOXD4P09016 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD4P09016 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD4P09016 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.2□□□□□ -1.9
HOXD4P09016 SNRPEP3-201ENST00000338402 276 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 RNU1-75P-201ENST00000347264 129 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 SNORD116-9-201ENST00000384000 95 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 SNORD116-3-201ENST00000384287 95 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 RNU6-1226P-201ENST00000384317 107 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 SNORD116-7-201ENST00000384404 95 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 SNORD116-5-201ENST00000384462 95 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 CYCSP45-201ENST00000402289 315 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 USP9YP33-201ENST00000412220 421 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC016907.1-201ENST00000419483 435 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC019178.2-201ENST00000423595 505 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD4P09016 USP9YP35-201ENST00000435696 412 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC009969.1-201ENST00000438726 172 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD4P09016 MTCO1P48-201ENST00000448024 1096 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 MTND2P19-201ENST00000449129 1012 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD4P09016 TRGVB-201ENST00000453257 471 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD4P09016 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD4P09016 RPL21P10-201ENST00000463521 490 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 KLRA1P-201ENST00000503499 986 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD4P09016 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD4P09016 AC117532.1-201ENST00000514638 323 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 RNU6-678P-201ENST00000516832 109 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD4P09016 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD4P09016 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXD4P09016 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD4P09016 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD4P09016 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD4P09016 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC011611.1-201ENST00000552179 197 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD4P09016 OR4H12P-201ENST00000556269 907 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 MIR5186-201ENST00000577504 120 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AC008507.1-201ENST00000587506 734 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXD4P09016 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD4P09016 IGHV3-29-201ENST00000604817 344 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD4P09016 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 ZNF37BP-203ENST00000452306 1352 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXD4P09016 AC007823.1-201ENST00000569932 1566 ntBASIC3.2□□□□□ -1.9
HOXD4P09016 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXD4P09016 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HOXD4P09016 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 OR5BR1P-201ENST00000524992 1330 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms