Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AC011504.1-201ENST00000623331 4103 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 RNA5SP507-201ENST00000363603 121 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 RNA5SP335-201ENST00000363817 110 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 SNORD63-201ENST00000384262 68 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 COX6B1P2-201ENST00000489624 230 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 AC023818.1-201ENST00000498379 384 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 AC104057.1-201ENST00000515547 497 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 RNA5SP272-201ENST00000516095 111 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 Y_RNA.686-201ENST00000516548 134 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 RNU6-971P-201ENST00000516920 106 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 AP002001.1-203ENST00000534002 267 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 RPSAP73-201ENST00000614820 330 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 AL591926.4-201ENST00000616895 298 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 AC073349.3-201ENST00000617616 186 ntBASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.74□□□□□ -1.17
CCDC61Q9Y6R9 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 PWAR1-201ENST00000624188 2414 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AP000866.6-201ENST00000638898 3579 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 SNORD82-201ENST00000365530 70 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 MIR569-201ENST00000385228 96 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 SNORD78.2-201ENST00000391076 69 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 MIR190B-201ENST00000401119 79 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AC234779.1-201ENST00000425910 285 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 NOP56P2-201ENST00000447491 769 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 RPS11P1-201ENST00000451072 473 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 HMGN2P6-201ENST00000551091 273 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 TGIF1P1-201ENST00000558095 802 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AC009127.3-201ENST00000570531 403 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 MIR5692A1-201ENST00000580523 69 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 SNORD113-5-201ENST00000607261 78 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 AC008785.1-201ENST00000624475 456 ntBASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
CCDC61Q9Y6R9 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 USP45-204ENST00000369233 2514 ntTSL 5 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 U8.4-201ENST00000363626 134 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 MIR551A-201ENST00000385042 96 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 HSPA8P15-201ENST00000401676 786 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AL590704.1-201ENST00000402856 794 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AL357075.1-201ENST00000404107 726 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 TRBV5-2-201ENST00000489095 273 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 RN7SL808P-201ENST00000496066 299 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AC025755.1-201ENST00000521306 278 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 CASP1P1-201ENST00000526345 212 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AL590705.4-201ENST00000532209 134 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 CDC42EP3P1-201ENST00000601004 764 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 AC110801.1-201ENST00000623590 212 ntBASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.72□□□□□ -1.17
CCDC61Q9Y6R9 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms