Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
CHMP3Q9Y3E7 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 SMG1P4-204ENST00000523028 4131 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 SNORD82-201ENST00000365530 70 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 RNU6-784P-201ENST00000384330 106 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 SSXP10-201ENST00000402595 565 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC068533.1-201ENST00000418542 415 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AL359265.2-201ENST00000434367 631 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 RPL12P18-201ENST00000437175 325 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 FABP5P14-201ENST00000437273 393 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 RPL21P133-201ENST00000443666 476 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC000111.2-201ENST00000448200 210 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 RPS29P33-201ENST00000456717 146 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC068305.1-201ENST00000497406 726 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC098591.2-201ENST00000510152 315 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 RPL39P5-202ENST00000512505 151 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC104057.1-201ENST00000515547 497 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 RNU6-123P-201ENST00000516163 102 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 COX6CP3-201ENST00000580869 223 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 PSMA6P4-201ENST00000603247 718 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 DUSP12P1-201ENST00000612874 516 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 AL138713.1-201ENST00000624026 2130 ntBASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CHMP3Q9Y3E7 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CHMP3Q9Y3E7 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
CHMP3Q9Y3E7 MTND5P10-201ENST00000603719 1809 ntBASIC6.09□□□□□ -1.44
CHMP3Q9Y3E7 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 RN7SKP16-201ENST00000410180 299 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 ARL5AP1-201ENST00000418991 388 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 SKA2P1-201ENST00000425592 390 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC108059.3-201ENST00000456388 214 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 RPS17P2-201ENST00000461663 408 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 Y_RNA.654-201ENST00000497848 106 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 ENPP7P11-201ENST00000505915 627 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 RNU7-51P-201ENST00000516560 62 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 RNA5SP454-201ENST00000517231 127 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 RNU6-794P-201ENST00000517261 64 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 MTND4P7-201ENST00000523876 130 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AP000857.1-201ENST00000532151 543 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC063949.1-201ENST00000552900 865 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 IMMP1LP2-201ENST00000552954 492 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC008269.2-201ENST00000561915 1105 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 MIR3672-201ENST00000584290 82 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC073539.2-201ENST00000597113 165 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC006363.1-201ENST00000603806 463 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC104662.1-201ENST00000604448 511 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AL391358.1-201ENST00000605342 190 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 FAM27B-201ENST00000610601 213 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AL136313.1-201ENST00000624804 202 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AP000843.1-201ENST00000624880 701 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 AC090337.1-201ENST00000579651 2074 ntBASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP3Q9Y3E7 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 AC009313.2-201ENST00000417893 1941 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 RNA5SP443-201ENST00000363083 132 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 RNVU1-6-201ENST00000364688 164 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 RNU6-26P-201ENST00000383985 107 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 RPS4XP9-201ENST00000405151 780 ntBASIC6.07□□□□□ -1.44
CHMP3Q9Y3E7 RNU6-985P-201ENST00000410182 104 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms