Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 HIGD1AP10-201ENST00000527837 282 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC024224.1-201ENST00000538284 609 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC009094.1-201ENST00000564443 426 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 SRGNP1-201ENST00000603392 451 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AL031281.1-201ENST00000604049 488 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC080013.4-201ENST00000607624 649 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AL590240.3-201ENST00000621416 943 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 AC110801.1-201ENST00000623590 212 ntBASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CPSF3Q9UKF6 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 RNU6-931P-201ENST00000363850 107 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 SNORD51-201ENST00000384320 80 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 RNU6-712P-201ENST00000410558 100 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 PIGPP2-201ENST00000411569 458 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC005005.2-201ENST00000420779 380 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 DUTP6-201ENST00000425573 462 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC007742.1-201ENST00000425789 329 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC005326.1-201ENST00000429197 123 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 TXNL1P1-201ENST00000429528 554 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AL590233.1-201ENST00000430017 456 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 ELOCP26-201ENST00000436067 329 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 EEF1E1P1-201ENST00000446998 430 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 SUMO2P2-201ENST00000456482 255 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC092754.2-201ENST00000463506 460 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 RPL23AP14-201ENST00000468281 468 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC087312.1-201ENST00000471411 480 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC020893.1-201ENST00000502452 580 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC147055.4-201ENST00000504399 745 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC004062.1-201ENST00000509926 645 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC105914.1-201ENST00000511798 226 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 SNORD84-203ENST00000584275 78 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 MIR4276-201ENST00000584832 70 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AL133507.1-201ENST00000605269 557 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 AL390240.1-201ENST00000612950 384 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 ZNF542P-204ENST00000482727 1305 ntBASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CPSF3Q9UKF6 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AL022578.1-201ENST00000439330 1433 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC058791.1-201ENST00000608412 3198 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 RPL23AP57-201ENST00000332361 466 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 OR5H2-201ENST00000355273 945 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 SNORD46.1-201ENST00000364139 104 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 RNU6-343P-201ENST00000364709 104 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 MIR591-201ENST00000385290 95 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 RNU6-952P-201ENST00000391164 108 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC119751.3-201ENST00000399720 670 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC126124.2-201ENST00000413542 321 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 RPL7P30-201ENST00000420888 709 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AL158156.1-201ENST00000422509 473 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 EZH2P1-201ENST00000431167 291 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 ATP5C1P1-201ENST00000441945 895 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 ARPC3P5-201ENST00000448802 534 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 USP9YP10-201ENST00000454868 628 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 MTCO3P11-201ENST00000455103 774 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AP001992.1-205ENST00000462248 379 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 RPL23AP67-201ENST00000465341 474 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC021205.2-201ENST00000480069 347 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AL358832.1-201ENST00000497800 389 ntBASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.63□□□□□ -1.83
CPSF3Q9UKF6 AC021146.5-201ENST00000503544 545 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 224.1 ms