Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC010133.1-201ENST00000615809 842 ntBASIC4.14□□□□□ -1.75
VSX1Q9NZR4 AC009233.1-201ENST00000616477 371 ntBASIC4.14□□□□□ -1.75
VSX1Q9NZR4 AL354950.2-201ENST00000617939 290 ntBASIC4.14□□□□□ -1.75
VSX1Q9NZR4 MTND1P37-201ENST00000636562 264 ntBASIC4.14□□□□□ -1.75
VSX1Q9NZR4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 AC125257.1-201ENST00000560400 2930 ntBASIC4.14□□□□□ -1.75
VSX1Q9NZR4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.14□□□□□ -1.75
VSX1Q9NZR4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC006020.1-201ENST00000420179 1854 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC015813.6-201ENST00000624409 5808 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC073343.1-201ENST00000328239 651 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 RNA5SP191-201ENST00000362585 102 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 RNU2-9P-201ENST00000410194 145 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 RPL23AP30-201ENST00000432419 501 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 TPT1P14-201ENST00000448018 505 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC078785.3-201ENST00000476607 425 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 IGLV2-34-201ENST00000490007 283 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 RPL36AP41-201ENST00000493820 306 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC021146.3-201ENST00000511911 260 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 RNA5SP401-201ENST00000515920 127 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AP001880.2-201ENST00000538233 448 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AL133153.1-201ENST00000557756 303 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 RN7SL652P-201ENST00000577769 300 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AL356055.1-201ENST00000602528 446 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC010591.1-201ENST00000603941 649 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 RMST_3.1-201ENST00000611651 109 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC087385.3-201ENST00000620477 187 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC068870.2-201ENST00000620635 389 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AC040168.1-201ENST00000623594 991 ntBASIC4.13□□□□□ -1.75
VSX1Q9NZR4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VSX1Q9NZR4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC027290.2-201ENST00000623210 18662 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 A2MP1-204ENST00000566278 4130 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 MIR448-201ENST00000362131 111 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RNU6-845P-201ENST00000362578 103 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RNU1-20P-201ENST00000363314 162 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 Y_RNA.142-201ENST00000363491 102 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RNU5E-8P-201ENST00000363502 116 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RNU6-996P-201ENST00000365438 107 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RNU6-432P-201ENST00000384196 109 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RNU6-1011P-201ENST00000384668 107 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 MIR1-2-201ENST00000384961 85 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 GLULP6-201ENST00000399502 913 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL109941.1-201ENST00000401925 229 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL136116.1-201ENST00000403591 381 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RN7SKP100-201ENST00000411258 284 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 BX510359.2-201ENST00000417920 305 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC140479.3-201ENST00000418944 1126 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 NCOR1P3-201ENST00000420479 303 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL590762.4-201ENST00000425885 253 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 OR2AS1P-201ENST00000427827 319 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RPL21P91-201ENST00000429231 479 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC016712.1-201ENST00000431088 378 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 ISCUP1-201ENST00000454451 448 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC005008.1-201ENST00000456151 612 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms