Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SSXP9-201ENST00000417503 292 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 USP9YP27-201ENST00000418455 438 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 FNDC3CP-201ENST00000420795 1155 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 BX276092.4-201ENST00000452056 248 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 RPL7L1P13-201ENST00000511702 739 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC008549.1-201ENST00000512900 643 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 COX6B1P6-201ENST00000522347 255 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC025281.1-201ENST00000567026 265 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC115989.2-201ENST00000578640 563 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC090312.2-201ENST00000582687 378 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 SNORD84-203ENST00000584275 78 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC019159.1-201ENST00000605094 187 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AL137246.1-201ENST00000607072 977 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC245517.5-201ENST00000611529 162 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC011890.2-201ENST00000613393 294 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC092650.2-201ENST00000619984 902 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 RNA5SP508-201ENST00000411327 119 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 OR51A3P-201ENST00000413596 924 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 YWHAZP8-201ENST00000436935 731 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AL627224.1-201ENST00000448334 444 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AL445669.2-201ENST00000454425 421 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC104435.1-201ENST00000483483 166 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AIG1P1-201ENST00000503376 148 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC108157.1-201ENST00000510511 539 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 RNU6-1004P-201ENST00000516584 111 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC073111.2-201ENST00000605657 1075 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC008962.1-201ENST00000605729 304 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC135803.1-201ENST00000608748 565 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 AC006963.1-201ENST00000624003 1052 ntBASIC2.01□□□□□ -2.09
SCN3AQ9NY46 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SCN3AQ9NY46 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2□□□□□ -2.09
SCN3AQ9NY46 THUMPD3P1-201ENST00000506556 1480 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SCN3AQ9NY46 RNA5SP391-201ENST00000363456 119 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2□□□□□ -2.09
SCN3AQ9NY46 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC005517.2-201ENST00000424673 553 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC2□□□□□ -2.09
SCN3AQ9NY46 RPL23AP20-201ENST00000447965 421 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 HMGN2P16-201ENST00000456802 261 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2□□□□□ -2.09
SCN3AQ9NY46 SYPL1P1-201ENST00000473622 768 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC004062.1-201ENST00000509926 645 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2□□□□□ -2.09
SCN3AQ9NY46 RNA5SP200-201ENST00000516360 103 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 RNU6-711P-201ENST00000517255 106 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 DNAJC8P1-201ENST00000554535 372 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC008687.2-201ENST00000597865 520 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC068722.2-201ENST00000618734 544 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 AC020923.1-201ENST00000624021 917 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
SCN3AQ9NY46 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SCN3AQ9NY46 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2□□□□□ -2.09
SCN3AQ9NY46 PTP4A1P7-201ENST00000423476 514 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 RPL21P66-201ENST00000426566 466 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 MTATP6P4-201ENST00000427725 675 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2□□□□□ -2.09
SCN3AQ9NY46 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC090543.1-201ENST00000492168 485 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2□□□□□ -2.09
SCN3AQ9NY46 SCARNA16.3-201ENST00000516595 184 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 AC074029.1-201ENST00000552531 1044 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC103710.2-201ENST00000609912 942 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 VIS1.1-201ENST00000610517 203 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SCN3AQ9NY46 AC010378.1-201ENST00000619270 362 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 AC244517.12-201ENST00000623581 663 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2□□□□□ -2.09
SCN3AQ9NY46 ATP8A2P3-201ENST00000426792 1536 ntBASIC2□□□□□ -2.09
SCN3AQ9NY46 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 ZNF720P1-201ENST00000562403 1939 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC096533.1-201ENST00000411645 353 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 NUP35P2-201ENST00000416748 943 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms