Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 AL365440.1-201ENST00000436135 2167 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 MTCO1P9-201ENST00000505577 1534 ntBASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CLIP3Q96DZ5 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC107068.1-201ENST00000563286 4218 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 NOL8P1-201ENST00000508336 3529 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 RNU6-451P-201ENST00000362921 107 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.166-201ENST00000363730 102 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 RNU6-1078P-201ENST00000364522 103 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 RNU6-629P-201ENST00000384061 103 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 RN7SKP16-201ENST00000410180 299 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 BX510359.2-201ENST00000417920 305 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 OR1AA1P-201ENST00000419597 916 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC104333.2-201ENST00000422630 192 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 FAR2P4-202ENST00000425399 584 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AL732292.1-201ENST00000426692 226 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 ISCA1P6-201ENST00000427740 390 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC092162.1-201ENST00000432828 434 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 RPL23AP20-201ENST00000447965 421 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AL121877.1-201ENST00000453704 622 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 RPS5P7-201ENST00000456664 608 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC007182.2-201ENST00000489251 402 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC093278.1-201ENST00000494700 600 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 NPM1P41-201ENST00000512920 831 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AP000907.2-201ENST00000530827 353 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 SNORA74C-1-201ENST00000580726 201 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 VN1R80P-201ENST00000597126 338 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC234771.5-201ENST00000600161 514 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AL162413.1-201ENST00000603198 110 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 MIR6780A-201ENST00000615089 68 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AL161637.1-201ENST00000622380 412 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 AC010149.2-201ENST00000637608 315 ntBASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CLIP3Q96DZ5 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC079741.1-201ENST00000321498 212 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.132-201ENST00000363421 102 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.159-201ENST00000363674 87 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RNA5SP505-201ENST00000364748 108 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 LAP3P1-201ENST00000403648 294 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RAB28P1-201ENST00000411517 641 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 MTCO2P12-201ENST00000427426 682 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 GTF2IP20-201ENST00000431663 360 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC005154.2-201ENST00000438110 379 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC016831.4-201ENST00000438302 307 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RPL7AP61-201ENST00000443410 636 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC011753.3-201ENST00000443436 406 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC000111.2-201ENST00000448200 210 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RPS17P13-201ENST00000448974 407 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC234775.1-201ENST00000454247 670 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RN7SL354P-201ENST00000469282 294 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RN7SL459P-201ENST00000481078 302 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 MTND1P3-201ENST00000484956 952 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC078817.1-201ENST00000492623 435 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms