Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 PSMA6P3-201ENST00000428242 164 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 EZH2P1-201ENST00000431167 291 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AL050321.1-201ENST00000432363 400 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC108734.1-201ENST00000439549 399 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RPS20P24-201ENST00000457473 361 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 snoU109.3-201ENST00000459477 145 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RN7SL75P-201ENST00000461926 281 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC020898.1-201ENST00000474167 787 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RN7SL499P-201ENST00000481141 276 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 TMEM251P1-201ENST00000503717 318 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 UBE2V1P12-201ENST00000503954 474 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC021678.1-201ENST00000505195 936 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC010460.2-201ENST00000509054 677 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC105914.1-201ENST00000511798 226 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RNU1-45P-201ENST00000517191 141 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AP001189.2-201ENST00000527320 189 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 EEF1B2P4-201ENST00000551398 348 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 HIGD1AP17-201ENST00000554576 276 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 NCAPGP2-201ENST00000557911 754 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC023813.2-201ENST00000564321 469 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC107075.1-201ENST00000613695 314 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC002076.2-201ENST00000617362 122 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 Z99129.2-201ENST00000619967 314 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC022509.4-201ENST00000621404 572 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AC244517.1-201ENST00000606030 2086 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 MTND5P19-201ENST00000424872 1794 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC107982.1-201ENST00000507171 1300 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 SNORA7.4-201ENST00000384249 137 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 SNRPEP2-201ENST00000397592 279 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 RAP1BP1-201ENST00000412709 553 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 RPL7P30-201ENST00000420888 709 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC007742.1-201ENST00000425789 329 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 HMGN2P31-201ENST00000432430 273 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 ELOCP26-201ENST00000436067 329 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 USP9YP22-201ENST00000438971 294 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 RPL39P6-201ENST00000448289 150 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC005297.2-201ENST00000450430 606 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 RPS15AP17-201ENST00000470598 390 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC079203.1-201ENST00000487972 404 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 RPL7P23-201ENST00000493874 747 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 KLRA1P-201ENST00000503499 986 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 HMGB1P28-201ENST00000507778 552 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC098799.2-201ENST00000509466 868 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 MTATP6P9-201ENST00000515039 680 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 OR10V3P-201ENST00000525712 725 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 OR4P1P-201ENST00000530808 1136 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AL121603.1-201ENST00000553815 142 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 COX6CP3-201ENST00000580869 223 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC005332.6-201ENST00000613178 446 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AL356863.1-201ENST00000623378 1080 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC099654.9-201ENST00000637055 678 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC108206.1-201ENST00000570186 4159 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC009487.2-201ENST00000420969 6821 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 AC233263.6-201ENST00000631132 1963 ntBASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC54Q8NEL0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms