Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.58□□□□□ -2
USP54Q70EL1 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.58□□□□□ -2
USP54Q70EL1 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.58□□□□□ -2
USP54Q70EL1 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.58□□□□□ -2
USP54Q70EL1 SNORD108-201ENST00000459332 71 ntBASIC2.58□□□□□ -2
USP54Q70EL1 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.58□□□□□ -2
USP54Q70EL1 AC087190.1-201ENST00000484462 480 ntBASIC2.58□□□□□ -2
USP54Q70EL1 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.58□□□□□ -2
USP54Q70EL1 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.58□□□□□ -2
USP54Q70EL1 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.58□□□□□ -2
USP54Q70EL1 AC068790.3-201ENST00000602988 553 ntBASIC2.58□□□□□ -2
USP54Q70EL1 AL592494.3-201ENST00000609485 464 ntBASIC2.58□□□□□ -2
USP54Q70EL1 Y_RNA.783-201ENST00000613546 102 ntBASIC2.58□□□□□ -2
USP54Q70EL1 SEPT7P7-201ENST00000420492 1301 ntBASIC2.58□□□□□ -2
USP54Q70EL1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.58□□□□□ -2
USP54Q70EL1 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.57□□□□□ -2
USP54Q70EL1 AL445685.2-201ENST00000422551 342 ntBASIC2.57□□□□□ -2
USP54Q70EL1 HNRNPDLP3-201ENST00000456745 380 ntBASIC2.57□□□□□ -2
USP54Q70EL1 AC006483.1-201ENST00000487308 313 ntBASIC2.57□□□□□ -2
USP54Q70EL1 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC2.57□□□□□ -2
USP54Q70EL1 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.57□□□□□ -2
USP54Q70EL1 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.57□□□□□ -2
USP54Q70EL1 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.57□□□□□ -2
USP54Q70EL1 AC103810.1-201ENST00000579873 453 ntBASIC2.57□□□□□ -2
USP54Q70EL1 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC2.57□□□□□ -2
USP54Q70EL1 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
USP54Q70EL1 AL359715.4-201ENST00000606629 1436 ntBASIC2.57□□□□□ -2
USP54Q70EL1 ZNF720P1-201ENST00000562403 1939 ntBASIC2.57□□□□□ -2
USP54Q70EL1 RNY1P10-201ENST00000363268 113 ntBASIC2.57□□□□□ -2
USP54Q70EL1 U3.15-201ENST00000365398 212 ntBASIC2.57□□□□□ -2
USP54Q70EL1 HMGN2P35-201ENST00000412164 270 ntBASIC2.57□□□□□ -2
USP54Q70EL1 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.57□□□□□ -2
USP54Q70EL1 AP000873.1-201ENST00000463987 400 ntBASIC2.57□□□□□ -2
USP54Q70EL1 AC010627.1-201ENST00000503819 1294 ntBASIC2.57□□□□□ -2
USP54Q70EL1 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.57□□□□□ -2
USP54Q70EL1 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.57□□□□□ -2
USP54Q70EL1 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.57□□□□□ -2
USP54Q70EL1 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.57□□□□□ -2
USP54Q70EL1 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.56□□□□□ -2
USP54Q70EL1 RNA5SP167-201ENST00000365461 116 ntBASIC2.56□□□□□ -2
USP54Q70EL1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.56□□□□□ -2
USP54Q70EL1 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.56□□□□□ -2
USP54Q70EL1 RNA5SP181-201ENST00000410246 98 ntBASIC2.56□□□□□ -2
USP54Q70EL1 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.56□□□□□ -2
USP54Q70EL1 NEK4P1-201ENST00000433383 879 ntBASIC2.56□□□□□ -2
USP54Q70EL1 AC124916.1-201ENST00000444020 547 ntBASIC2.56□□□□□ -2
USP54Q70EL1 RSL24D1P2-201ENST00000445584 366 ntBASIC2.56□□□□□ -2
USP54Q70EL1 AC017007.3-201ENST00000479865 435 ntBASIC2.56□□□□□ -2
USP54Q70EL1 MTAPP1-201ENST00000489154 819 ntBASIC2.56□□□□□ -2
USP54Q70EL1 GTF2IP9-201ENST00000502460 301 ntBASIC2.56□□□□□ -2
USP54Q70EL1 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.56□□□□□ -2
USP54Q70EL1 TMEM248P1-201ENST00000510579 951 ntBASIC2.56□□□□□ -2
USP54Q70EL1 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.56□□□□□ -2
USP54Q70EL1 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.56□□□□□ -2
USP54Q70EL1 HMGN1P28-201ENST00000521340 364 ntBASIC2.56□□□□□ -2
USP54Q70EL1 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USP54Q70EL1 AL359821.1-201ENST00000605519 182 ntBASIC2.56□□□□□ -2
USP54Q70EL1 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.56□□□□□ -2
USP54Q70EL1 ZNF271P-202ENST00000465539 1970 ntBASIC2.56□□□□□ -2
USP54Q70EL1 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC2.55□□□□□ -2
USP54Q70EL1 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.55□□□□□ -2
USP54Q70EL1 SNORA40.18-201ENST00000391200 128 ntBASIC2.55□□□□□ -2
USP54Q70EL1 RPL31P52-201ENST00000407532 367 ntBASIC2.55□□□□□ -2
USP54Q70EL1 RNU4-62P-201ENST00000410125 130 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AC104332.2-201ENST00000429959 156 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AL157827.1-201ENST00000447622 132 ntBASIC2.55□□□□□ -2
USP54Q70EL1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.55□□□□□ -2
USP54Q70EL1 AC098799.2-201ENST00000509466 868 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.55□□□□□ -2
USP54Q70EL1 AC006270.2-201ENST00000578523 652 ntBASIC2.55□□□□□ -2
USP54Q70EL1 RPP40P2-201ENST00000603596 712 ntBASIC2.55□□□□□ -2
USP54Q70EL1 SNRPGP19-201ENST00000603826 189 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AC009314.1-201ENST00000603871 304 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AL391813.2-201ENST00000609113 322 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AC084768.2-201ENST00000622736 221 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AP003072.5-201ENST00000623872 773 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AC138649.5-201ENST00000637456 137 ntBASIC2.55□□□□□ -2
USP54Q70EL1 AL139811.1-201ENST00000424779 2299 ntBASIC2.55□□□□□ -2
USP54Q70EL1 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USP54Q70EL1 AL627390.1-201ENST00000396055 340 ntBASIC2.54□□□□□ -2
USP54Q70EL1 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
USP54Q70EL1 MIR1294-201ENST00000408503 142 ntBASIC2.54□□□□□ -2
USP54Q70EL1 RNA5SP338-201ENST00000410495 85 ntBASIC2.54□□□□□ -2
USP54Q70EL1 AL353729.1-201ENST00000425044 720 ntBASIC2.54□□□□□ -2
USP54Q70EL1 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC2.54□□□□□ -2
USP54Q70EL1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.54□□□□□ -2
USP54Q70EL1 TVP23BP2-201ENST00000455082 615 ntBASIC2.54□□□□□ -2
USP54Q70EL1 RNA5SP182-201ENST00000516064 82 ntBASIC2.54□□□□□ -2
USP54Q70EL1 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.54□□□□□ -2
USP54Q70EL1 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.54□□□□□ -2
USP54Q70EL1 MIR5089-201ENST00000580047 84 ntBASIC2.54□□□□□ -2
USP54Q70EL1 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.54□□□□□ -2
USP54Q70EL1 VIS1.1-201ENST00000610517 203 ntBASIC2.54□□□□□ -2
USP54Q70EL1 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.54□□□□□ -2
USP54Q70EL1 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.54□□□□□ -2
USP54Q70EL1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
USP54Q70EL1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
USP54Q70EL1 RPL30P3-201ENST00000424262 333 ntBASIC2.53□□□□□ -2
USP54Q70EL1 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.53□□□□□ -2
USP54Q70EL1 PTGES3P5-201ENST00000455109 434 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms